Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13680 1390 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 1130 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT1G05570 1106 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT1G06490 1106 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT2G31960 1104 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT3G59100 1080 / 0 ATGSL11 glucan synthase-like 11 (.1) AT3G14570 1005 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G07160 982 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1) AT5G36870 980 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT2G36850 944 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020893 [exp] 1534 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10002096 [exp] 1159 / 0 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10039199 [exp] 1133 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10013744 [exp] 1132 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 1129 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10037469 [exp] 1123 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10001056 [exp] 1083 / 0 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10001424 [exp] 1083 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10007327 [exp] 1071 / 0 AT1G06490 1448 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058300 [exp] 1416 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 1139 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 1130 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 1105 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G203500 [exp] 1068 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 1066 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.011G095100 [exp] 1003 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.015G089300 [exp] 989 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 971 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.013G131300 [exp] 929 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10033483 pacid=23143318 polypeptide=Lus10033483 locus=Lus10033483.g ID=Lus10033483.BGIv1.0 annot-version=v1.0 ATGACCCCATACTATAGTGAGGAAACTGTCTATTCTAAATCTGAACTTGAAAAATCTGACCTTGAAATGGAAAATGAAGATGGTGTGTCAATTATATACT ACTTGCAAAAAATCTACCCAGATGAATGGACAAACTTCATGGAACGAATTAATTGTAAGAAAGAGAACGAGGCTTGGGAAAATGAAGAAAACATTTTGCA GATCCGCCATTGGGCTTCCTTAAGGGGTCAAACACTCTGTCGCACAGTTAGAGGAATGATGTATTATCGAAGAGCTTTGAAACTCCAGGCTTTTCTTGAT ATGGCTAATGAGAGTGAGATATTAGCTGGTTATAAAGCCATTACGAATCCAACTGAGGAAGATAAGAAAAGTCAAAGGTCCCTCTCCGCTCAATTGGAGG CAGTAGCAGACATGAAGTTTACATATGTAGCTACATGCCAGATTTATGGAAACCAGAAGAGGAAAGGAGATCGTCATGCAACAAACATCCTTAATTTGAT GGTTAACAATCCCTCGCTACGTGTTGCATATATCGACGAAATAGAAGAACGTGATGGGGCCAAAACACAAAAAGTTTGCTACTCCGTGCTGGTGAAAGCT GTTGACAATCTTGATCAGGAAATTTATCGTATCAAACTTCCGGGTCCAGCAAAATTAGGTGAAGGAAAGCCTGAAAATCAGAACCATGCCATAGTATTCA CTAGAGGGGAAGCTATGCAAGCAATTGATATGAATCAGGATAACTATCTAGAAGAAGCTTTTAAAATGCGCAACCTTCTTGAAGAATTCCATGAGGACCA CGGGGTGCGGCCACCTACGATTTTAGGTGTTCGTGAACATATCTTCACGGGAGGTGTTTCTTCTTTGGCTTGGTTCATGTCAAATCAAGAAACAAGTTTT GTTACCCTTGGTCAAAGAGTTCTTGCAAGGCCGTTGAAGATACGATTCCACTATGGCCATCCTGATGTGTTCGACCGAATTTTCCACATAACCCGTGGGG GTGTCAGCAAAGCTTCCCGCGGCATCAACTTGAGCGAAGACATCTTTGCTGGATTTAACTCAACCCTACGGAGAGGGAATGTTACTCATCATGAGTACAT TCAAGTTGGTAAAGGTCGAGATGTGGGGCTCAACCAAATCTCTTTATTTGAAGCGAAAGTAGCATGCGGGAACGGGGAGCAAACACTTAGCAGGGATATC TATCGACTCGGCCATCGATTCGATTTCTTCCGTATGCTCTCCTTTTACTACACAACAATCGGATTCTATATCAGCTCAATGGTGGTGGTCTTCACAGTTT ATGCATTCTTATATGGGCGGTTGTATTTGGCATTGAGTGGGTTGGAGGGTTCTATAATCAAGTTTGCGAAGCATAGAGGAGATACAGCTCTAAGGGCAGC AATGGCTTCACAGTCAGTTGTTCAGCTAGGACTTCTCACAGCCTTGCCCATGGTCATGGAGATGGGCCTGGAGAGAGGGTTCAGAACAGCATTAGGTGAA ATCATTATTATGCAGCTTCAGCTTGCCGCAGTTTTCTTCACCTTTTCACTAGGGACAAGGGTTCATTACTTTGGGAGAACGGTCCTCCACGGCGGTGCGA AATACAGAGCCACAGGTCGTGGCTTTGTCGTTCGACATGAGAAGTTCGCTGAGAATTACAGGATGTACTCAAGAAGTCACTTTGTCAAAGCCCTGGAGCT ACTGCTACTGCTGATATGTTACCAGATATACGGGAAAGCCGTAAGTGGGATCGCATACATGCTCGTCACCTCTTCCATGTGGTTCTTAGTATGCTCGTGG TTGTTCGCACCTTTCCTATTCAACCCATCAGGATTCGAGTGGCAGAAGGTCGTTGATGATTGGGATGACTGGACGAAATGGATCAACAGCCGAGGTGGAA TCGGTGTGCCTGCAAATAAGAGCTGGGAATCATGGTGGGAAGAGGAACAGGAACATCTCCAACACACCGGCATCTCAGGACGGATTTGCGAAGTAATTTT GGCTCTCCGTTTCTTCATCTATCAGTACGGCATCGTTTACCAGCTCAAAGTCACCAAAGCCACTTCAGCTGGACGAGAACACAGTATTTCCGTTTATGGT CTGTCGTGGCTGGTTATTGTCGCTATGATGCTAATCCTGAAGACTGTATCAACGGGTAGGAAGAAGTTCAGCGCGGACTTCCAGCTAATGTTCAGACTAC TCAAGTTCATACTGTTCATAGGATTCGTGGTGACGCTGATAATCCTGTTCACTACACTCCATCTGACGGTGGGAGATGTGTTCCAGAGCTTGCTGGCGTT CCTACCAACGGGATGGGCGATTCTGCAGATATCGCAAGCGTGCAAGCCGATAGTAAAGGGATTGAAGATGTGGGGGTCGGTGAAGGCATTGGGTAGAGGG TACGAGTACATGATGGGGTTGTTACTGTTTCTACCTATAGCAGTGCTGGCTTGGTTCCCGTTCGTGTCGGAGTTCCAGAACAGACTTCTGTTCAACCAAG CCTTCAGCAGAGGGCTTCAGATCCAACGCATCCTCTCTGGTGGTAAGAAGCACAAGTGA
AA sequence Show only first row Show all	>Lus10033483 pacid=23143318 polypeptide=Lus10033483 locus=Lus10033483.g ID=Lus10033483.BGIv1.0 annot-version=v1.0 MTPYYSEETVYSKSELEKSDLEMENEDGVSIIYYLQKIYPDEWTNFMERINCKKENEAWENEENILQIRHWASLRGQTLCRTVRGMMYYRRALKLQAFLD MANESEILAGYKAITNPTEEDKKSQRSLSAQLEAVADMKFTYVATCQIYGNQKRKGDRHATNILNLMVNNPSLRVAYIDEIEERDGAKTQKVCYSVLVKA VDNLDQEIYRIKLPGPAKLGEGKPENQNHAIVFTRGEAMQAIDMNQDNYLEEAFKMRNLLEEFHEDHGVRPPTILGVREHIFTGGVSSLAWFMSNQETSF VTLGQRVLARPLKIRFHYGHPDVFDRIFHITRGGVSKASRGINLSEDIFAGFNSTLRRGNVTHHEYIQVGKGRDVGLNQISLFEAKVACGNGEQTLSRDI YRLGHRFDFFRMLSFYYTTIGFYISSMVVVFTVYAFLYGRLYLALSGLEGSIIKFAKHRGDTALRAAMASQSVVQLGLLTALPMVMEMGLERGFRTALGE IIIMQLQLAAVFFTFSLGTRVHYFGRTVLHGGAKYRATGRGFVVRHEKFAENYRMYSRSHFVKALELLLLLICYQIYGKAVSGIAYMLVTSSMWFLVCSW LFAPFLFNPSGFEWQKVVDDWDDWTKWINSRGGIGVPANKSWESWWEEEQEHLQHTGISGRICEVILALRFFIYQYGIVYQLKVTKATSAGREHSISVYG LSWLVIVAMMLILKTVSTGRKKFSADFQLMFRLLKFILFIGFVVTLIILFTTLHLTVGDVFQSLLAFLPTGWAILQISQACKPIVKGLKMWGSVKALGRG YEYMMGLLLFLPIAVLAWFPFVSEFQNRLLFNQAFSRGLQIQRILSGGKKHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	0	1
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	3.5	0.7934
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10012349 [exp]	7.1	0.7901
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	13.3	0.8214
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	15.5	0.7247
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	31.2	0.7460
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10041630 [exp]	34.9	0.7133
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	57.5	0.7075
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002643 [exp]	75.0	0.6809
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	77.0	0.7121
AT3G45850			P-loop containing nucleoside t...		Lus10025275 [exp]	92.3	0.6742

Compare expression of checked genes

Lus10033483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.