Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13690 422 / 4e-142 PRLI-interacting factor, putative (.1) AT5G60050 207 / 5e-60 BTB/POZ domain-containing protein (.1) AT1G63850 196 / 1e-55 BTB/POZ domain-containing protein (.1) AT3G50780 175 / 7e-48 unknown protein AT4G10800 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020892 [exp] 995 / 0 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10017511 [exp] 208 / 4e-59 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 206 / 1e-58 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 193 / 5e-55 AT3G50780 602 / 0.0 unknown protein Lus10028772 [exp] 196 / 7e-55 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 192 / 5e-54 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 182 / 2e-50 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10016789 [exp] 158 / 2e-43 AT3G50780 408 / 1e-140 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058700 [exp] 545 / 0 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 530 / 0 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.001G100900 [exp] 209 / 2e-59 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 205 / 6e-59 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 205 / 6e-59 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 194 / 2e-55 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 191 / 7e-53 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 49 / 8e-06 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.004G154600 [exp] 43 / 0.0005 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033484 pacid=23143535 polypeptide=Lus10033484 locus=Lus10033484.g ID=Lus10033484.BGIv1.0 annot-version=v1.0 ATGGCCGAGCTCGGCCGCCGGAACCGGCGCAACACATGGTGCTGCTCCATCACGCATCCTCCCTGCAGAAGCCCCGAGTACGACTGCCCCACCGCGTCTT CCAAGCCCAAGCCCAAATCCGAGCTCCCTTTCAAGACTCGCTCCAACGATTCGCCTCAGAGCTTGAAGCTGAGCTTCGTCGGCAAGATTGACCCCCGGAA GATCCTTTCCCCCGGACGAATTTCCCCGATCGACTCCGATCCTACCGCCGGGGAGCAGCTGGCGGCGTCCGCGGCGTCACCAGCGATGATGGCCGACGTG GATCAGATTGCTGCTCCGGCCGTGGAATCTACGGCGGAGGCGGAATGTGCGAGATCCGACAGGTCGGGCTCTTTCAGAGGACGGAACGATGTTGCCGCCG GTGTTGCTTCGACGGTGGCCGGTTCGGGTTCTGGACATTTTGGGATCGATGCGGGTAACGATTTGTTGGACGTGAGGCTGAATGCGAGGGGGAAGAGAGG AGGTTCATTGGTCTTGGAGATGAACTCGGACATTCTGATGGCGAACTCGGATGTTATGGGAGAGTTAGTAGCAGAGTTCAAGAAGGGTTTGAAGGTGAAT CGCTCTGCCAAGGAGAGTGCCGTGAGCAGTGGTACTAGTTCGATGAAGGTTTGCATAATTGAGGTCCCTGATGTGGAAAATTTGGGGGTTTTCAGAGATA CGATTGAGTTGATGTTTGTGGATGATATCACCACAAAGCTCTTGAAGTATGGAGCTTATCGCGCCATTTCTATCCTTGAGGTATCAGCTGATCTGAAGTT TATTCAAGGCGCTCTATCTTGCTTAAACTACCTCGCAGCAGTTCCTTGGACTGAAGAAGAAGAGGAAAGACTGAGACGTGTGTTGACTGTGCACAACTTC GACGAAGCAGCAACCAGCGAAATTTTCGACAGACTCGACTTGTGGAAATCAAGCGAAGGTTCACAATGGGATTTGACCAAAGAACTCGCGTGGTCAGTCA CCGCCTGTACCGATCCATTTGCAAGAAACGAATTAAAGTCATTGGTAAAAGCCCTTGTTTCCAAGAGCTCCGTCTATGAGAAAGAGCAGCCAGTCATAAA CAAGGCTGATGTGTACGTCATTTGCCAGAGCTGCCTAGACTCGTTAGTCAGCCTCTTCGACAAAGCATCGAATCCTAGTAATACTGATGGCATCATACCG GCTAAAAAGTACGTGGAGAGGCCTTTGGTTGAAAGGATATCAACACAGGTGGACAACATCAACTGGCTCCAAGAGATCCTTCTAGAATGGCAGATGGCAG AGGAGTTCGTCGACATGTGGGGGAACCAAGAAGAACTCGGTAAGCTTCACGAGGGAGCATCTCCGTTGTTTAGATACGAACTTAGCCGGGTTTCGGCAGG GTTGTTCATAGCCATGGGGACAAGGAGGTTGCATTGTCAGTCAGAGTCAAGGGCGAGGCTTTTCAAGACGTGGTTCAGACCGATGCTGCAGGATTTCGGC TGGATTCAGAGGTGCAAGAAAGGGTTGGACATGAAAGTGTTGGAAGAAGCAATGGGTCAGTCGCTGCTAACACTTCCTTTGAAGATGCAGCATACGCTGT TTATGGAATGGTTTAGCCACTTCTCCAAGCATGGCAGTGACTGCATCAACCTCAGCAAGGCCTTCCAGATTTGGTGGCGAAGGTCGTTCCTTCGAGGGTC GGAGTCTCTCGGCGTCGAATCCAGGTAG
AA sequence Show only first row Show all	>Lus10033484 pacid=23143535 polypeptide=Lus10033484 locus=Lus10033484.g ID=Lus10033484.BGIv1.0 annot-version=v1.0 MAELGRRNRRNTWCCSITHPPCRSPEYDCPTASSKPKPKSELPFKTRSNDSPQSLKLSFVGKIDPRKILSPGRISPIDSDPTAGEQLAASAASPAMMADV DQIAAPAVESTAEAECARSDRSGSFRGRNDVAAGVASTVAGSGSGHFGIDAGNDLLDVRLNARGKRGGSLVLEMNSDILMANSDVMGELVAEFKKGLKVN RSAKESAVSSGTSSMKVCIIEVPDVENLGVFRDTIELMFVDDITTKLLKYGAYRAISILEVSADLKFIQGALSCLNYLAAVPWTEEEEERLRRVLTVHNF DEAATSEIFDRLDLWKSSEGSQWDLTKELAWSVTACTDPFARNELKSLVKALVSKSSVYEKEQPVINKADVYVICQSCLDSLVSLFDKASNPSNTDGIIP AKKYVERPLVERISTQVDNINWLQEILLEWQMAEEFVDMWGNQEELGKLHEGASPLFRYELSRVSAGLFIAMGTRRLHCQSESRARLFKTWFRPMLQDFG WIQRCKKGLDMKVLEEAMGQSLLTLPLKMQHTLFMEWFSHFSKHGSDCINLSKAFQIWWRRSFLRGSESLGVESR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13690			PRLI-interacting factor, putat...		Lus10033484 [exp]	0	1
AT5G21050			unknown protein		Lus10019547 [exp]	8.4	0.6665
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	27.7	0.6322
AT5G64816			unknown protein		Lus10025266 [exp]	29.5	0.6346
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	30.7	0.6091
AT4G36850			PQ-loop repeat family protein ...		Lus10022491 [exp]	32.0	0.6306
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10016053 [exp]	34.2	0.5682
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10018288 [exp]	35.7	0.5942
AT2G44525			Protein of unknown function (D...		Lus10007556 [exp]	50.9	0.5960
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	63.5	0.5921
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	67.4	0.5367

Compare expression of checked genes

Lus10033484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.