Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18660 665 / 0 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 527 / 0 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT4G33330 379 / 2e-124 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G08990 345 / 9e-112 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 340 / 9e-110 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT5G18480 125 / 1e-30 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 86 / 3e-18 ATGOLS4 galactinol synthase 4 (.1) AT1G09350 86 / 7e-18 ATGOLS3 galactinol synthase 3 (.1) AT1G60450 79 / 8e-16 ATGOLS7 galactinol synthase 7 (.1) AT1G56600 79 / 1e-15 ATGOLS2 galactinol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020890 [exp] 887 / 0 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 536 / 0 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 520 / 3e-178 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10021731 [exp] 400 / 3e-132 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 394 / 5e-130 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10031507 [exp] 324 / 1e-103 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10029932 [exp] 314 / 2e-99 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10027949 [exp] 124 / 4e-30 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 114 / 1e-28 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107200 [exp] 666 / 0 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G061600 [exp] 661 / 0 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 543 / 0 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.014G029900 [exp] 400 / 1e-132 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 331 / 3e-106 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 320 / 4e-102 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 121 / 7e-29 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G150400 [exp] 80 / 5e-16 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.002G191600 [exp] 79 / 1e-15 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.014G116800 [exp] 79 / 1e-15 AT2G47180 568 / 0.0 galactinol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10033485 pacid=23143428 polypeptide=Lus10033485 locus=Lus10033485.g ID=Lus10033485.BGIv1.0 annot-version=v1.0 ATGGATGCCAGACACCGCTTACCGGCATCGATGAAGCTTCTCCAGAGAAGCAAAATCAAAGGTGCAGCCATCAGCTTCCAGGAGAAGGATAAAGCTGCTG CTACCAGCTGCTTCAGATTTGCTTCCTTTGTCAAGTTCTGTGCTGTGGTCATCATCTTCTGCACCTTTGTCACTTTTGTTTCCTTCCCTGAATCTGACCC TCTCTCTTCCACCCCTGCTCACAGGCCAAATTTTGTGAACAGATGGATATGGGGAGGAGAAGATCCAAGATACTCAACAAACTTAGAACCCATCAACTGG AACGACGTCGTTAAAGCCGTCGGCAGACTCAACCAACACAATTCCATCGGACTGCTAAACTTCAACGACACAGAACTCAGCCATTGGCAAACCAAAATCT CACCTGAAGCAACCAACATCCCTCTCCATCTCAACAAACCCGCCGACCAGAACACCACCTGGGACTCCCTCTACCCGGAATGGATCGACGAGGAGCAAGA GACCGAGGTCCCCGTCTGTCCTTCCCTGCCGAAAATCGAGCCCCCACGAAAACGGCTCGACCTCATCGTGGTCAAGCTGCCTTGCAGGAACGAGGCCAAT TGGTCTAGGGACGTTGCTAGGTTGCATTTGCAGCTTTCTGCAGCAAACCTTGCTGTGTTATCTGCTAAGGGGTCTTACCCTGCTGTGCATTTGCTGTTCA TTACCAAGTGCTTCCCTTTGCCAAATCTCTTCACTTGCAGAGAGCTTGTTGCCAGGGAAGGGAATGCTTGGCTTTATAAGCCTGACTTGGATGTTTTGGC TCATAAGCTTCAGCTCCCTATTGGCTCCTGTGAACTTGCTCTTCCCTTCATTAACAACAAAGGGCAAGGAGGAGGGTACGGAGGGAATCCAAAGAGAGAA GCTTACGCGACGATTCTTCACTCCGCCGACCTCTACGTCTGCGGAGCCATTGCAGCAGCTCAGAGCATCCGAATGTCAGGCTCAACCAGAGACATGGTCA TTCTGGTAGACGACACTATCAGCGTTTACCACAGAAGCGGATTGGAAGCCGCCGGGTGGAAGATCCGAACCGTGCAGAGGATCCGGAACCCCAAGGCGGA GAAAGACGCCTACAATGAATGGAACTACAGCAAGTTCCGTCTATGGCAGCTGACGGACTACGACAAGATAATCTTCATCGACGCCGACCTCCTCATCCTC CGCAACATCGATTTCTTGTTCGGCATGCCGGAGATCTCCGCCACGGGGAACAACGGCACTCTGTTCAACTCGGGAGTCATGGTGATTGAGCCTTCCAACT GCACGTTCAAGCTCCTGATGGATCACATCAACGAGATACAGTCCTACAACGGCGGAGATCAAGGTTATCTGAACGAAGTCTTCACATGGTGGCATAGAGT TCCGAAGCACCTCAACTTTCTGAAGAACTTCTGGATCGGAGACGACGAGGAAGTGAAGAGGAAGAAATCCGAGCTGCAGCAGTTCTGCTTGCTGAAGTCG AAGCAGAAGGCGCAGCTTGAGTGGGACAGACGGGAGGCGGAGAAGGGGAATTTCTCCGACGGACACTGGAAAGTTAGGGTTAGGGATTGGAGGCTGAGCA AGTGTGTGGATAATGTGTGTAATTGGAAGGGGATGTTGAGGCATTGGGGTGAGGGTAATTGGACTGGCGTCGAGGAGCTTCTCAATCCCACACCGCCGGC CATCAAAGTTTCCTCTTTTTCTTCTTCTTCTTCCTCTCTTGCCGGATTGTGA
AA sequence Show only first row Show all	>Lus10033485 pacid=23143428 polypeptide=Lus10033485 locus=Lus10033485.g ID=Lus10033485.BGIv1.0 annot-version=v1.0 MDARHRLPASMKLLQRSKIKGAAISFQEKDKAAATSCFRFASFVKFCAVVIIFCTFVTFVSFPESDPLSSTPAHRPNFVNRWIWGGEDPRYSTNLEPINW NDVVKAVGRLNQHNSIGLLNFNDTELSHWQTKISPEATNIPLHLNKPADQNTTWDSLYPEWIDEEQETEVPVCPSLPKIEPPRKRLDLIVVKLPCRNEAN WSRDVARLHLQLSAANLAVLSAKGSYPAVHLLFITKCFPLPNLFTCRELVAREGNAWLYKPDLDVLAHKLQLPIGSCELALPFINNKGQGGGYGGNPKRE AYATILHSADLYVCGAIAAAQSIRMSGSTRDMVILVDDTISVYHRSGLEAAGWKIRTVQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLIL RNIDFLFGMPEISATGNNGTLFNSGVMVIEPSNCTFKLLMDHINEIQSYNGGDQGYLNEVFTWWHRVPKHLNFLKNFWIGDDEEVKRKKSELQQFCLLKS KQKAQLEWDRREAEKGNFSDGHWKVRVRDWRLSKCVDNVCNWKGMLRHWGEGNWTGVEELLNPTPPAIKVSSFSSSSSSLAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	1.4	0.9922
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	1.7	0.9878
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	2.0	0.9876
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10033672 [exp]	2.6	0.9841
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	2.8	0.9892
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10043061 [exp]	4.0	0.9839
					Lus10011724 [exp]	4.2	0.9834
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	4.2	0.9849
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	4.9	0.9818
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	5.5	0.9852

Compare expression of checked genes

Lus10033485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.