Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09760 558 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 557 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 305 / 7e-95 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 293 / 7e-91 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 281 / 2e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G43050 276 / 4e-86 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 275 / 2e-85 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 273 / 9e-85 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 271 / 2e-83 ATPME2 pectin methylesterase 2 (.1) AT3G60730 269 / 2e-83 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005587 [exp] 559 / 0 AT5G09760 689 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020888 [exp] 487 / 9e-166 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10013344 [exp] 280 / 2e-87 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10027206 [exp] 277 / 1e-86 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033399 [exp] 278 / 3e-86 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10039314 [exp] 276 / 8e-86 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 272 / 2e-85 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 270 / 1e-83 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 268 / 2e-83 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107300 [exp] 626 / 0 AT5G09760 690 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G061500 [exp] 582 / 0 AT5G09760 717 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 290 / 1e-90 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 285 / 5e-89 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 278 / 4e-87 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 277 / 1e-86 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 277 / 2e-86 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 277 / 3e-86 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.018G051400 [exp] 277 / 5e-86 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.015G127500 [exp] 275 / 1e-85 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10033486 pacid=23143390 polypeptide=Lus10033486 locus=Lus10033486.g ID=Lus10033486.BGIv1.0 annot-version=v1.0 ATGAGACAAAACACAATTAAGAAACCACTTGAAGTCTTAATCCTCAAATGGCTCTCCATAATGATTACCTTCTTCTTAACCCTTCAATATCCTTCATATG CACGGCCAAACCCAAACCAGATCCAACTATCATGTAACGCAACAAGACACCCACAATATTGCACAACATCCTTAACGCAATCGAATCTCGTCCCTTCGAA CGATCCGACCCCGATTCAAATCATCCAATCAGCGATATCGATATCCACCGCAACCCTAAACCTCACCCAATCAAAGTTGCAAACTTTGCTGACGATTGCC AACACACGAGGCAACCACAACATAACCAGCGTAGCCAACATATGTCTGGAGGTGCTCGGTTACTCTACCTTTAGATTATCTTCCTCGAACGACTCCTTAT CCTCCCCATCTGGGAAGATTAAGGACGTTCGGGCGTGGATGAGCGCCGCGTTGTCTTACCAATACGACTGCTCCGGAGGCCTCAATTACTACGCGTGTAA CTACACGCATATAACGAGCGAATCCATCGCGTCGCTGACCAACCTGATCAACGAGACGACCAATGCGCTAGGCATGGTGGTGTCGTACGATCGGTTTGGG AACGATACGAGCTTGTGGAGACAGGTGGGGACAGAGCGAGACGGGGTTTGGGAGGATTCGAGCCACGAGGGCGAGTTTACGAGCGAGTTTCCGTCCGAGT ACTTGAAAATTGATGTTGTGGTGGGTAAAGAGGGTGGATATAGGAAGATCCAAGAAGCTGTTGATGCTGCTCCAAGTAATCTTGTGGAGAAGAGGTTCGT GATTCATATCAAAGAAGGGGTGTATGAGGAGATTGTTAGGATCCCATTTGAGAAGAAGAATGTTGTGTTCTTGGGTGATGGTATGGGTAAAACCGTCATT ACTGGAAATTTAGCTGTTGGTCATCAGCCTGGAGTCACAACATACGACTCTGCCACTGTTGCTGTTCTGGGAGACGGGTTCATGGCAACAAACCTGACAA TACAAAACACAGCAGGACCACCAGAGCACCAAGCAGTAGCATTCCGGTCCGACAGCGACCTCTCGATGCTCGAAAACTGCGAATTCCTCGGCAACCAAGA CACCTTATACGCACACTCCCTCCGACAGTACTACAAATCCTGCCGAATCACAGGAAACGTAGACTTCATCTTCGGAAACTCTGCCTCCGTGTTTCAGGAC TGCCTCATCCAGCTCGTCCCTCTGCTCGACAAGCCCGAGAGCGGGGGCCAGCTCGCGATAACAGCGCAGGGAAGAACCGATCCGGCACAGTCGACAGGGT TCGTGTTCCTAAACTGCACGATCAACGGGACCGAGGAGTACATGGCGCTTTTCGACAAGGACCCTAGCGTGCACAAGAACTACTTGGGGAGGCCGTGGAA GGAGTATTCGAGAGCAGTGTTTATCAACTGTGAAATGGGGAGTGTGGTGGCGGAAGAGGGGTGGATGCCATGGAGTGGTGAGTATGGACTGAACACTCTT TACTATGGTGAGTTTGGTAACCATGGAGATGGGAGTGACAGAGGGAAAAGAGTGAAGTGGAGCTCTCAGGTTCCTGAAGAACATCTGGATTCTTACTCGT TGCAGAGTTTCATCCAAGGGGATTGGTGGATCCCTAAAAGTTGA
AA sequence Show only first row Show all	>Lus10033486 pacid=23143390 polypeptide=Lus10033486 locus=Lus10033486.g ID=Lus10033486.BGIv1.0 annot-version=v1.0 MRQNTIKKPLEVLILKWLSIMITFFLTLQYPSYARPNPNQIQLSCNATRHPQYCTTSLTQSNLVPSNDPTPIQIIQSAISISTATLNLTQSKLQTLLTIA NTRGNHNITSVANICLEVLGYSTFRLSSSNDSLSSPSGKIKDVRAWMSAALSYQYDCSGGLNYYACNYTHITSESIASLTNLINETTNALGMVVSYDRFG NDTSLWRQVGTERDGVWEDSSHEGEFTSEFPSEYLKIDVVVGKEGGYRKIQEAVDAAPSNLVEKRFVIHIKEGVYEEIVRIPFEKKNVVFLGDGMGKTVI TGNLAVGHQPGVTTYDSATVAVLGDGFMATNLTIQNTAGPPEHQAVAFRSDSDLSMLENCEFLGNQDTLYAHSLRQYYKSCRITGNVDFIFGNSASVFQD CLIQLVPLLDKPESGGQLAITAQGRTDPAQSTGFVFLNCTINGTEEYMALFDKDPSVHKNYLGRPWKEYSRAVFINCEMGSVVAEEGWMPWSGEYGLNTL YYGEFGNHGDGSDRGKRVKWSSQVPEEHLDSYSLQSFIQGDWWIPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09760			Plant invertase/pectin methyle...		Lus10033486 [exp]	0	1

Compare expression of checked genes

Lus10033486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.