Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18640 152 / 5e-38 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G26850 81 / 1e-16 histone-lysine N-methyltransferases (.1.2) AT2G33835 70 / 3e-12 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020889 [exp] 603 / 0 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002082 [exp] 565 / 0 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10003846 [exp] 529 / 4e-178 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015319 [exp] 79 / 9e-15 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10025447 [exp] 78 / 2e-14 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10014914 [exp] 45 / 0.0002 AT5G12440 151 / 4e-42 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107800 [exp] 423 / 4e-135 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 382 / 2e-119 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.011G056600 [exp] 88 / 1e-17 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.006G227200 [exp] 81 / 1e-15 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2) Potri.018G051900 [exp] 80 / 3e-15 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.003G204300 [exp] 43 / 0.0008 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10033487 pacid=23143250 polypeptide=Lus10033487 locus=Lus10033487.g ID=Lus10033487.BGIv1.0 annot-version=v1.0 ATGAGTAGTAGTGCTGGCCGAAAGCGGAGTTCTAAGTGGGATTTGGGGGAAGAATCCCGAAATTCCTTTGATAATCAACAGAACAACGGGAAAGCAGGCT TAAGTTATCACGAGACCGACAATGGTAACCGAAGCAGGTGGTCAACTATGGACAGAAGAGGCTCGCTAGGAGATCATAGAATGGTTGATGATGAATATGG AAAAACCTCTGGATGGGAAAGAGATGGAAGTTACGGCCCGAGAATGTCCCCTGGCCTTGAAGAATGGAGACATAGAAGTCGACGCCGCTCTCCTAGTAAA GAATGGAAAAGAGCTAGAAGAAGCAGGAGCAGAAGTCAGAGTCGCAGCAGAAGCAGGAGCCCGGGGCACTCCTTAAGACGAGATTCATCGACTTCAGATA GAATTAGAAATAGATCGGGTGTATCAGCTGAGTTATGCAAACAGTTTGTTGCTGGGCGATGCAGGAGGGGAAGTCACTGTCACTTTCTTCACGAAAGTGC TCCGAGTTATGAGGATAATTGGGATGGACGTGGGAAATCTCTACCTTCTAGATATTCTGATGCACCTGCTAAAGAGCCAACCAATGATTTTGTCAGAGAA AGAGATATTGATAGACGACACAGAGATCCTTCTCCAGATAGGCCTAACGAGCCAATTCGTAGAGCAATTGAAACTCCCTGTAGATACTTTGCTGCCGGTA ACTGTAGGAATGGAACCAGTTGCAGATTTTCTCATCAAGGTCAGGGTGATAATACCAGTCCTGAGAGGAGGCCACGTAACGAAAGGCGGTTAATGGACCA AAATATGGATAATCGGGAGAAAATGTGGGATGGCCCGAAATGGAGAGATGTGGATAATTATTCGGAAGCATCAAAGTCAACTAGGGATGTTGAGAAACAA TGGAATGGTGATAAATATAGTAATCTGAATAATAATTCAGATCCTGCAAAACTGATTGATGACAGGAGTCATAAAACAGGCTGGTCTGTGGATAATTCAC GTGTTCAAAGCTTGGCTGGAAGAACAACGCTAAAGCAGCATCAGTCACCAACTAATTTGGTTGAGAACGACCAAAATAAGAGCCTGAAGGTGAAAGGAGA GAACATTGGTGATAATAGGCACCTGACTGAACAAAGTAGTAATAACATTTGGGAAGGTGATATGGAAATGTCTCCTGAGTGGAATTATGGACGATCTAAC CATATTGATAAAGGACCACCACAACCTGGCCAGGATACTGATATCACGGTGGTCCCTTTGCAGCCATTGATACATGAGACATCTTCTGTACAGAATGATT ACTACTCGAGGGATCTCGGTGCTGCTGTTGGTTCGTCACTCAATAGAAATACTGCGGTTAGAGCATCGAATGGTTCCCATATTAATAGTTCTGGCAGCAT CTTGGCTGCATCAAGCTTAAACCGGAACGGGGTGGGATTAAATGCTTTGCCCCATCTTCCAACCATGAACTCTGTTGAGCAAAGTCGAGTAGGAAATGCA CATGAACATGATTACTTAAGAGGAGTAACTGGAACAAGCCCTATGAGCCCAAAGCCATTGAATATAGGACAAGGTACTGGCGATAGAAGTAATATTGCTG TCAATTCCAGCACTCCGTTCACTCAGAATATTGTCAGTGGTGAACAACTCGCTACACTTACCAATCTTTCAGTTTCTCTAGCTCAGTTACTTGCCAACGG ACATCAGCTTCCCCAACTTTATGCTACTCACAGTTCTAATCCGGCCAGTGATCATGTTAAACAATATGACCCCATATGTGATAGTATTGAACCTGGGAAT CAAGGTGTTGGCAATAATCTTAATGACCAAAAAGAGAAAAGCACTGGAGATCACGGGGAGGCACCAATGGCTGCAACGAACGGTAGTAATGATAAGAGTG GAAAGTCGAATGAACTCAAACCCGGTGTAGAATCTGGAATCATCAAGGAAAGCAGTGGAAAGAACGCCAAAGATTCCAGCAGCAAAGTGAAAGAGAGTAA AGCTGGAGAAGAAAACATCGATGCAGATGACAAAGATGACGAGGAGGACAAGAAAAACAAGGAAGCAAAGGGAAGTCGAGCATTCAAGTTTGCGCTTGTG GAGTTTGTGAAGGAAGCTTTGAAGCCGGCATGGAAGGAAGGGCAAGTGAGCAAAGATTCTTACAAGAACATAGTGAAGAAGGTTGTTGACAAAGTGACTG GCTCAGTGCAGGTGGCCAACATACCCCAAACGCAAGAAAAGATTGAACAATATGTGTCGGCTTCTAAGCCAAAGATGACCAAACTCGTGCAGACGAGAAG CACCCCTTGGACGGCCCAAGTGTGCACACTTCAAGGGTGCAATTCTGGAATTCCTCGAGTAGCAAGCAGCTTGCAGTCCCTTGGAAATATCCTTGATGCC TCCGACCGCTCTAGAAACGCCCCCTCTGGGATGTCTTCAACTGTGAACCACAGGGAGGGGGTCATCAAACATGTAGTACTTGGATGA
AA sequence Show only first row Show all	>Lus10033487 pacid=23143250 polypeptide=Lus10033487 locus=Lus10033487.g ID=Lus10033487.BGIv1.0 annot-version=v1.0 MSSSAGRKRSSKWDLGEESRNSFDNQQNNGKAGLSYHETDNGNRSRWSTMDRRGSLGDHRMVDDEYGKTSGWERDGSYGPRMSPGLEEWRHRSRRRSPSK EWKRARRSRSRSQSRSRSRSPGHSLRRDSSTSDRIRNRSGVSAELCKQFVAGRCRRGSHCHFLHESAPSYEDNWDGRGKSLPSRYSDAPAKEPTNDFVRE RDIDRRHRDPSPDRPNEPIRRAIETPCRYFAAGNCRNGTSCRFSHQGQGDNTSPERRPRNERRLMDQNMDNREKMWDGPKWRDVDNYSEASKSTRDVEKQ WNGDKYSNLNNNSDPAKLIDDRSHKTGWSVDNSRVQSLAGRTTLKQHQSPTNLVENDQNKSLKVKGENIGDNRHLTEQSSNNIWEGDMEMSPEWNYGRSN HIDKGPPQPGQDTDITVVPLQPLIHETSSVQNDYYSRDLGAAVGSSLNRNTAVRASNGSHINSSGSILAASSLNRNGVGLNALPHLPTMNSVEQSRVGNA HEHDYLRGVTGTSPMSPKPLNIGQGTGDRSNIAVNSSTPFTQNIVSGEQLATLTNLSVSLAQLLANGHQLPQLYATHSSNPASDHVKQYDPICDSIEPGN QGVGNNLNDQKEKSTGDHGEAPMAATNGSNDKSGKSNELKPGVESGIIKESSGKNAKDSSSKVKESKAGEENIDADDKDDEEDKKNKEAKGSRAFKFALV EFVKEALKPAWKEGQVSKDSYKNIVKKVVDKVTGSVQVANIPQTQEKIEQYVSASKPKMTKLVQTRSTPWTAQVCTLQGCNSGIPRVASSLQSLGNILDA SDRSRNAPSGMSSTVNHREGVIKHVVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	2.2	0.8529
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	3.7	0.8516
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	4.9	0.8258
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	6.3	0.8405
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	7.1	0.8156
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	8.7	0.8496
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	8.9	0.8218
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	8.9	0.8316
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	9.5	0.8229
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	11.8	0.8025

Compare expression of checked genes

Lus10033487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.