Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00120 142 / 1e-42 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 132 / 1e-38 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 123 / 9e-34 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 117 / 1e-32 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 117 / 1e-32 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G43175 82 / 5e-19 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 84 / 9e-19 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT1G27740 81 / 2e-18 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT2G14760 81 / 3e-18 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G33880 81 / 4e-18 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042647 [exp] 141 / 1e-41 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 140 / 2e-41 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 125 / 9e-36 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 107 / 2e-27 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 103 / 3e-26 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 87 / 3e-21 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 89 / 1e-20 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10001068 [exp] 82 / 3e-18 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 81 / 6e-18 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060900 [exp] 160 / 1e-49 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 152 / 2e-46 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 137 / 2e-40 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 119 / 5e-33 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 117 / 3e-32 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 117 / 3e-32 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 120 / 6e-32 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 92 / 1e-23 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 92 / 2e-23 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.001G294300 [exp] 82 / 3e-18 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033488 pacid=23143305 polypeptide=Lus10033488 locus=Lus10033488.g ID=Lus10033488.BGIv1.0 annot-version=v1.0 ATGGACATCAACCAATCCCATCCATGGATCAATCATGATCAACCACAAACCGAGCCAATATTCGATCCTTTCTCATCAACCTTTGGCCTCGACCACAACT TGATCATCAACCACCAACAAGAAGATGGAGGAGATCAAGAAGAGGAACTGGATGGAGATCAAGAGGAAGAGGAGGAGCTTGGAGCACTCAAGGAGATGAT GTACAGGATGGCGGCGATGCAACCCGTAGAAATCGACCCGACTTCCATCAGAAAGCCGGGCAGAAGGAACGTCCGGATCAGCGACGACCCGCAGAGCGTG GCAGCCCGCAACCGCCGCCAGAGGATCAGTGAGAAGATCAGGATCCTCCAGCGGCTTGTCCCTGGTGGGACCAAGATGGACACTGCCTCCATGTTGGAGG AGGCGGTCCGCTACCTCAAGTTCTTGAAGCGTCAAATTCGCCTCCTCCAGCAGACTGATAATCACATTACCACTAGATTAACCCCTTCTCTCGACGATGG AGGGGGGTTCGGGATTGCTCCTGCTAATGGAGGTGGGATTCACATCGGTGGTAGCAACGTCGGCGGCGGCGATGAACTCGGGTGTTTTAGTAATCATCAT GCATGA
AA sequence Show only first row Show all	>Lus10033488 pacid=23143305 polypeptide=Lus10033488 locus=Lus10033488.g ID=Lus10033488.BGIv1.0 annot-version=v1.0 MDINQSHPWINHDQPQTEPIFDPFSSTFGLDHNLIINHQQEDGGDQEEELDGDQEEEEELGALKEMMYRMAAMQPVEIDPTSIRKPGRRNVRISDDPQSV AARNRRQRISEKIRILQRLVPGGTKMDTASMLEEAVRYLKFLKRQIRLLQQTDNHITTRLTPSLDDGGGFGIAPANGGGIHIGGSNVGGGDELGCFSNHH A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Lus10033488 [exp]	0	1
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	8.7	0.6230
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10000678 [exp]	8.8	0.6762
AT1G17615			Disease resistance protein (TI...		Lus10005374 [exp]	8.8	0.6179
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	13.3	0.6849
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	14.1	0.6215
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10002890 [exp]	20.4	0.6480
AT5G14380		AGP6	arabinogalactan protein 6 (.1)		Lus10022309 [exp]	28.9	0.5767
					Lus10040421 [exp]	42.4	0.6072
					Lus10037474 [exp]	51.4	0.5530
AT5G58400			Peroxidase superfamily protein...		Lus10030146 [exp]	54.1	0.5409

Compare expression of checked genes

Lus10033488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.