Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64630 612 / 0 MUB3.9, NFB1, NFB01, MUB3, FAS2 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT3G44530 143 / 1e-36 HIRA homolog of histone chaperone HIRA (.1.2) AT5G23430 75 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G21540 75 / 4e-14 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 75 / 4e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 70 / 2e-12 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 66 / 5e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 63 / 1e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 63 / 1e-10 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 63 / 2e-10 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020888 [exp] 725 / 0 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10000155 [exp] 298 / 9e-101 AT5G64630 147 / 1e-42 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020585 [exp] 146 / 2e-37 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10004893 [exp] 143 / 2e-36 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10013452 [exp] 79 / 3e-15 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 78 / 5e-15 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011224 [exp] 71 / 1e-12 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 71 / 1e-12 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 69 / 1e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108200 [exp] 659 / 0 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.009G144800 [exp] 149 / 2e-38 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.004G184900 [exp] 145 / 2e-37 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.010G255400 [exp] 78 / 4e-15 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 78 / 5e-15 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G121100 [exp] 72 / 6e-13 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 67 / 2e-11 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G050100 [exp] 67 / 2e-11 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.009G058000 [exp] 65 / 4e-11 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G144400 [exp] 64 / 9e-11 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10033489 pacid=23143515 polypeptide=Lus10033489 locus=Lus10033489.g ID=Lus10033489.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGTACAGTTCAAATCAACTGGCACGACATGAAGCCAGTTCTGTCAGTGGACTTTCACCCGATCTCCGGCCTCCTCGCTACCGGCGGCGCCG ATTACGATATCAAGCTCTGGTTGATAAGTCCAGCAGAACCAGAGAAGAAAACCCCAACTGCTACTTACCAGAATAGTCTTTCGTATCATGGATCGGCCGT AAATGTACTTCGCTTCTCTCCATGTGGTGAACTGCTTGCTTCTGGTGCTGATGGAGGTGAGCTGATCCTATGGAAGTCACAAGCCACAGAGTCTGGGAAA GCGTCAGTGTGGAAAGTTCTCAAGAATCTAACGTTTCACCGCAAGGATGTCTTAGATATGGAATGGTCTGGTGACTCTGCATTTCTGATATCTGGGTCAG TTGATAACTCATGCATCATATGGGACATTAACAAAGGCTGTGTGCATCAGATGTTGGATGGCCATCTACATTATGTTCAAGGTGTTGCATGGGATCCTCT GGGGAAGTATGTTGCATCTCTTAGCTCTGACAGAACGTGCAGAGTTTACGCCAGAAAAACACAGCCAAAATCAAAAGGACTTGAAAAACCTTACGTTTGC CAACACGTAATCACAAAAGCTGAACAGCAGGCAAAGGACGATTCCAAGTCTACAAAAACCCATCTTTTTCTCGACGAAACTTTGGCTTCTTTCTTCCGAA GATTAGCCTGGTCCCCTGATGGGTCGTTCTTAGTCGCGCCAGCAGGTTCTTACAAAATTTCTCCTTCATCAGAAACGTTGAACACAGCTTATGTATTTTC CAGAAAGGATCTGTCAAGGCAAGATATTTTCTTTAGGAAGAACACACCTGCATTAATGCTACCTGGAGCTTCTAAACCGGTTATAGCCGTGCGATTTTGT CCTCTGCAGTTTACCCTCAGGGGAACAAATTCAGATGGGCTCTTCAAACTTCCTTACCGCCTGATTTTCGCGGTAGCTACTCTAAATTCGGTGTACATAT ACGATACCGAAAGTGTTCCTCCGATAGCAGTTCTTGCGGGGCTTCACTATGCTGCAATCACAGACATTGCATGGTCAGCTAATGGAGAGCTCTTAGCAGT GTCGTCTCAAGACGGCTACTGCACCTTAGTCGAATTCCAAAGCAACGAACTGGGTTCGCCTCTTGTCGCTCAAGGAACGAAGAACAGCATGCCTCAGAGT GATAAGAAACCCGAGGAAGACGGAGAAGCAATGGACATCAGTGGCGGTTCTTCTACAAACGCAGAAGGTAAAAAGATCAGTGTGGAAGAGAAGAGTACAT CTCCAGTTGCGGTGTCTGCAACTCCTGCGAATCCTAACAAGCCAGCAAGGAAGAGAATTACTCCTATGGCGATTGATCCGTAG
AA sequence Show only first row Show all	>Lus10033489 pacid=23143515 polypeptide=Lus10033489 locus=Lus10033489.g ID=Lus10033489.BGIv1.0 annot-version=v1.0 MKGGTVQINWHDMKPVLSVDFHPISGLLATGGADYDIKLWLISPAEPEKKTPTATYQNSLSYHGSAVNVLRFSPCGELLASGADGGELILWKSQATESGK ASVWKVLKNLTFHRKDVLDMEWSGDSAFLISGSVDNSCIIWDINKGCVHQMLDGHLHYVQGVAWDPLGKYVASLSSDRTCRVYARKTQPKSKGLEKPYVC QHVITKAEQQAKDDSKSTKTHLFLDETLASFFRRLAWSPDGSFLVAPAGSYKISPSSETLNTAYVFSRKDLSRQDIFFRKNTPALMLPGASKPVIAVRFC PLQFTLRGTNSDGLFKLPYRLIFAVATLNSVYIYDTESVPPIAVLAGLHYAAITDIAWSANGELLAVSSQDGYCTLVEFQSNELGSPLVAQGTKNSMPQS DKKPEEDGEAMDISGGSSTNAEGKKISVEEKSTSPVAVSATPANPNKPARKRITPMAIDP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	0	1
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	1.0	0.9647
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	1.4	0.9598
					Lus10038266 [exp]	2.4	0.9288
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	2.6	0.9229
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	3.5	0.9441
					Lus10017515 [exp]	3.6	0.9010
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	4.5	0.9384
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	5.2	0.9134
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	6.9	0.9219
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10010162 [exp]	7.9	0.8870

Compare expression of checked genes

Lus10033489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.