Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63840 1424 / 0 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 317 / 2e-93 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G11720 285 / 1e-82 Glycosyl hydrolases family 31 protein (.1) AT3G45940 270 / 3e-77 Glycosyl hydrolases family 31 protein (.1) AT1G68560 261 / 7e-74 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020887 [exp] 1807 / 0 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 295 / 1e-85 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 288 / 1e-82 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10035671 [exp] 267 / 2e-75 AT3G23640 1456 / 0.0 heteroglycan glucosidase 1 (.1.2) Lus10034315 [exp] 266 / 3e-75 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 262 / 5e-74 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 252 / 2e-70 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 238 / 1e-65 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 114 / 5e-27 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100000 [exp] 1457 / 0 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.005G069000 [exp] 1417 / 0 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 322 / 1e-94 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.011G154200 [exp] 306 / 4e-90 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 298 / 5e-87 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 297 / 8e-87 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 295 / 5e-86 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 262 / 5e-74 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 261 / 6e-74 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.006G039500 [exp] 94 / 2e-19 AT5G63840 74 / 3e-13 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10033490 pacid=23143335 polypeptide=Lus10033490 locus=Lus10033490.g ID=Lus10033490.BGIv1.0 annot-version=v1.0 ATGGCGTCCCAAATTGGCGGCCGCCATTCAGTTCTGATCCTTCTATTCCTTCTTCTCTCCATCGTTTCCCAAACAGCACTCTCATGGAAGAAGGAAGAGT TCCGTAACTGTAATCAGACCCCTTTCTGCAAGCGTGCTCGCTCCCGCAACCCCGGGACTTGTACCTTGATCGCCGATCAAGTTTCCATTTCCGAAGGTCG GCTCACTGCCAAGCTCAGCCCGAGACCTGTTCCCGATCAGGGGGATCAGATCTCCAAGCCTCTGCTTCTCTCGCTCTCGGTACACCAGAAAGGGATCCTA CGCTTGAAAATTGATGAGGAATCTGCGCTTGACCCGCCAAAATCTCGGTTCCAAGTCCCCGACGTGGTCGTCCCCGAGTTTGAGGAGAGTATGCTATGGC TGTCTAGGGTTTCTACTGAGACTGTCGATGGCGATTCAGCTCTTTCCACTGTCGTCTATCTAGCGGACGGGTATGAGGCTGTTCTTCGACATGATCCGTT TGAGATTTACGTCCGAGAGAAGTCAGGTAAGCGCCGTTTGGTTTCTATGAACTCTCATCAGCTGTTTGATTTCGAGCAATTGAGGTCGAAAGATGAAGGG GAAGATTGGGAAGAGAGGTTCAAGAGTCATACAGATAGTAGACCTTACGGACCTCAGTCGATCAGTTTTGATGTGTCGTTTTATGATGCTGAAATTGTCT CCGGTCTACCGGAGCATGCTACTAGCGTAGCTCTCAAGCCTACTAAAGGTCCTGGAGTTGATGACTCAGAGCCTTACAGATTGTTTAACTTGGATGTTTT CGAGTACCTCCATGAGTCGCCTTTCGGTCTCTATGGTTCAATACCATTGATGATTGCTCATGGGAAGGGTGGGAAGAGTTCTGGATTCTTCTGGTTAAAC GCTGGTGAGATGCAAATTGATGTATTGGGTGATGGCTGGAATGCTGATTCTGGGCTTTCCCTGCCTTCTGATCAGAAGAGAATCGATACACTCTGGATGA GTGAGGCAGGCATTGTAGATGCTTTCTTCTTTGTTGGACCAGGTCCTAAGGACGTTGTGAGCCAATACATTGCTGTCACGGGGAAACCAGCAATGCCACA GCATTTCGCCACTGCTTATCATCAGTGTAGGTGGAATTACAGGGATGAGGAGGATGTCGACAATGTGGATGCCAAGTTCGACGAGCACGATATTCCCTAT GACGTTTTGTGGCTAGACATTGAGCACACTGATGGTAAGAGGTACATGACGTGGGATTCTGTTACGTTCCCGCATCCCGAGGAAATGCAAAAGAAGTTGG CAGCCAAAGGAAGGCACATGGTGACCATCGTTGATCCTCATATTAAGAGGGATGACAACTATTACATACATAAGGAGGCTACAGAGAAAGGATACTATGT GAAGGATTCTAGTGGGAAGGACTTTGATGGGTGGTGCTGGCCAGGTTCCTCATCTTACTTGGATGTGTTGAGCCCCGAGGTTAGAACGTGGTTTAGTAGC AAGTTTGCATTTGACAGCTACAAGGGTTCAACTCCGTCACTGTATATTTGGAATGATATGAATGAGCCTTCCGTGTTCAATGGTCCAGAGATTTCAATGC CAAGAGATGCTTTACATTTTGGGGGAGTGGAGCATCGGGAACTACACAACGCATATGGCTACTACTACCATATGGCGACATCAAATGGTCTTATCAAGCG TGGAGATGGGACTGACAGGCCCTTTGTTCTGTCAAGAGCATTCTTTGCTGGAACTCAGAGGTTTGGATCAGTCTGGACAGGGGACAACACTGCAGACTGG GATCATTTGAGAGCGTCTGTGCCAATGCTTTTGACCCTTGGTTTATCTGGAATATCATTCTCAGGTGCGGATGTTGGAGGGTTTTTCGGTAATCCGGAGC CGGAGTTATTAGTTCGTTGGTACCAACTTGGTGCTTTCTATCCCTTCTTCAGGGCCCATGCTCATCAGGACACGAAAAGACGCGAGCCTTGGTTATTTGG AGACCATAATACGAAGCTCATTAGACAAGCTGTGCATGTCCGTTACATGTTGCTTCCATATTTCTACACGTTGTTCCGAGAGGCCAACACGACCGGTACC CCCATTATGCGTCCTCTGTGGATGGAGTTCCCTTCTGATGAGGCCACCTTTAACAATGATGAAGCTTTCATGCTCGGAAGCAGCATCTTGGTCCAAGGAA TTTACACAGAGCGAGCGAAACACGCTTCGGTTTATCTACCAGGCAAAGAACTCTGGTATGACCTTTTAAGTGGAGCTCCATACAAGGGTTCTCAAATTCA CAAGCTAGTGGCTTTGGAGGACCGAATTCCTGCATTCCAAAAGGCTGGGACGATCATACCCAGGAAAGATCGTTATCGTCGCAGCTCAACACAGATGGCT AATGATCCCTATACTTTGGTGATTGCCCTCAACAGTTCTCAAGCAGCTGAAGGGGAGCTCTACATCGACGACGGGAAGACCTTCGAGTTCCTTGAAGGAG CCTACCTCCACCGCCGATTCGTGTTCTCAAATGGCAAGCTCTCATCTTTCGACTTGACTCATAACAAGAAGCCGAGGCAGTTCACATCCCAGACTGTCAT TGAAAGAATCATACTGCTGGGATACTCTCCCGGACCGAAGAATGCCCTCATCAAGCCAGGGAATGGTAAAGCCGAAGTTGGTCTAGGGCCACTCGTACTT GAAGAGGGGCTTCGGTCTTCGTCTTCTTCGGTTGTAACCATCCGGAAGCCGAGCCTCCCAGTGGACAAGGACTGGAGTGTAGAACTTGTGTGA
AA sequence Show only first row Show all	>Lus10033490 pacid=23143335 polypeptide=Lus10033490 locus=Lus10033490.g ID=Lus10033490.BGIv1.0 annot-version=v1.0 MASQIGGRHSVLILLFLLLSIVSQTALSWKKEEFRNCNQTPFCKRARSRNPGTCTLIADQVSISEGRLTAKLSPRPVPDQGDQISKPLLLSLSVHQKGIL RLKIDEESALDPPKSRFQVPDVVVPEFEESMLWLSRVSTETVDGDSALSTVVYLADGYEAVLRHDPFEIYVREKSGKRRLVSMNSHQLFDFEQLRSKDEG EDWEERFKSHTDSRPYGPQSISFDVSFYDAEIVSGLPEHATSVALKPTKGPGVDDSEPYRLFNLDVFEYLHESPFGLYGSIPLMIAHGKGGKSSGFFWLN AGEMQIDVLGDGWNADSGLSLPSDQKRIDTLWMSEAGIVDAFFFVGPGPKDVVSQYIAVTGKPAMPQHFATAYHQCRWNYRDEEDVDNVDAKFDEHDIPY DVLWLDIEHTDGKRYMTWDSVTFPHPEEMQKKLAAKGRHMVTIVDPHIKRDDNYYIHKEATEKGYYVKDSSGKDFDGWCWPGSSSYLDVLSPEVRTWFSS KFAFDSYKGSTPSLYIWNDMNEPSVFNGPEISMPRDALHFGGVEHRELHNAYGYYYHMATSNGLIKRGDGTDRPFVLSRAFFAGTQRFGSVWTGDNTADW DHLRASVPMLLTLGLSGISFSGADVGGFFGNPEPELLVRWYQLGAFYPFFRAHAHQDTKRREPWLFGDHNTKLIRQAVHVRYMLLPYFYTLFREANTTGT PIMRPLWMEFPSDEATFNNDEAFMLGSSILVQGIYTERAKHASVYLPGKELWYDLLSGAPYKGSQIHKLVALEDRIPAFQKAGTIIPRKDRYRRSSTQMA NDPYTLVIALNSSQAAEGELYIDDGKTFEFLEGAYLHRRFVFSNGKLSSFDLTHNKKPRQFTSQTVIERIILLGYSPGPKNALIKPGNGKAEVGLGPLVL EEGLRSSSSSVVTIRKPSLPVDKDWSVELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10033490 [exp]	0	1
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	1.0	0.9281
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10016184 [exp]	1.4	0.9231
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	2.0	0.9157
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	4.2	0.9126
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	7.1	0.9165
AT1G21370			unknown protein		Lus10029764 [exp]	8.9	0.9055
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	9.7	0.9147
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	10.9	0.8891
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	11.0	0.9044
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	11.6	0.9063

Compare expression of checked genes

Lus10033490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.