Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18680 435 / 7e-154 Amino acid kinase family protein (.1) AT3G10030 231 / 2e-71 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020884 [exp] 548 / 0 AT3G18680 452 / 8e-161 Amino acid kinase family protein (.1) Lus10008988 [exp] 260 / 4e-83 AT3G10030 450 / 3e-154 aspartate/glutamate/uridylate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057700 [exp] 460 / 5e-164 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1) Potri.010G233500 [exp] 258 / 2e-82 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.006G117300 [exp] 257 / 3e-82 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 254 / 4e-81 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.007G110201 [exp] 65 / 1e-13 AT3G18680 76 / 2e-18 Amino acid kinase family protein (.1) Potri.007G110301 [exp] 0 / 1 AT3G18680 0 / 1 Amino acid kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10033492 pacid=23143245 polypeptide=Lus10033492 locus=Lus10033492.g ID=Lus10033492.BGIv1.0 annot-version=v1.0 ATGGCGGTCTCCTCCTCCGTCTCTCCCATCCCCGCGCTCAGTATCACCACTTCCTCCTCCTCTTCTTCTTTGTCGTTGCCGTCCTACTTACAATTGAGCC CTCTCAAGCTTCCTCGCTTCAGCTCCATCATGCCTCGTAGCAGTTCAAGCCGGCGAATGGCGGTGCATTGCTCCTCTGACAACGGACCAACTCCAAACAG ACAGCCTCAAATGGCACCGACACTTCCAGCTAGGGTGCCCATGACTGAAAATGGGACGGCCAGACCTTACAAGTGGCAGAGGGTGTTACTTAAAGTTAGC GGTGAAGCACTTGCGGGAGATCATATGCAGAACATTGACCCAAAGATCACGATGGCCATTGCAAGGGAGGTTGCAGCTGTAACACGCCTTGGCATTGAGG TCGCAATAGTGGTAGGAGGGGGGAATATATTTCGTGGAGCCTCATGGGCTGGAAGCAGTGGCCTTGACCGTTCTTCTGCTGACTACATTGGGATGCTGGC AACTGTGATGAATGCTATATATCTTCAAGCAACCATGGAGAGTATTGGCATCCCAACAAGAGTGCAGACTGCTTTTCGCATGTCCGAGGTTGCTGAGCCA TACATTCGTCGTAGAGCTGTACGACATTTGGAAAAGGGAAGGGTTGTTATATTTGCAGCAGGAACTGGGAATCCGTTCTTTACAACAGACACAGCTGCTG CCTTGCGTTGTGCTGAAAAGGTAGTGTTGAAAGCTACAAATGTCGACGGAGTATTTGATGATAATCCCAAGTATAACCCCAATGCCCGTCTCCTCGAGAA TCTCACGTACCAGGAGGTGATTTCAAAAGATCTGTCTGTGATGGACATGACCGCCATTACACTCTGCCAAGAGAACAAAATCCCCGGTTTTGTGTTCAAT CATTCGAAACCGGGCAACATCAGCAAAGCCATCAAAGGAGAAAGAGTTGGGACACTTATCGGAGCACCTGAGAATTCGAAGGTTGATGCATAG
AA sequence Show only first row Show all	>Lus10033492 pacid=23143245 polypeptide=Lus10033492 locus=Lus10033492.g ID=Lus10033492.BGIv1.0 annot-version=v1.0 MAVSSSVSPIPALSITTSSSSSSLSLPSYLQLSPLKLPRFSSIMPRSSSSRRMAVHCSSDNGPTPNRQPQMAPTLPARVPMTENGTARPYKWQRVLLKVS GEALAGDHMQNIDPKITMAIAREVAAVTRLGIEVAIVVGGGNIFRGASWAGSSGLDRSSADYIGMLATVMNAIYLQATMESIGIPTRVQTAFRMSEVAEP YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEKVVLKATNVDGVFDDNPKYNPNARLLENLTYQEVISKDLSVMDMTAITLCQENKIPGFVFN HSKPGNISKAIKGERVGTLIGAPENSKVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18680			Amino acid kinase family prote...		Lus10033492 [exp]	0	1
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	6.8	0.8897
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	8.5	0.8735
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10029785 [exp]	13.6	0.8857
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10014297 [exp]	15.3	0.8368
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	15.4	0.8857
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	18.0	0.8844
					Lus10038585 [exp]	20.6	0.8850
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	24.0	0.8820
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	25.7	0.8717
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	29.3	0.8822

Compare expression of checked genes

Lus10033492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.