Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64600 362 / 3e-121 O-fucosyltransferase family protein (.1) AT1G22460 291 / 2e-93 O-fucosyltransferase family protein (.1) AT5G01100 226 / 1e-67 O-fucosyltransferase family protein (.1) AT2G37980 221 / 1e-65 O-fucosyltransferase family protein (.1) AT3G02250 218 / 1e-65 O-fucosyltransferase family protein (.1) AT3G54100 217 / 3e-64 O-fucosyltransferase family protein (.1) AT5G35570 216 / 9e-64 O-fucosyltransferase family protein (.1) AT5G15740 212 / 1e-63 RRT1 O-fucosyltransferase family protein (.1) AT2G03280 211 / 2e-63 O-fucosyltransferase family protein (.1.2) AT1G14020 203 / 3e-60 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020882 [exp] 511 / 3e-180 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 303 / 2e-98 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 275 / 1e-86 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 240 / 1e-73 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 233 / 5e-71 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 217 / 2e-65 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 216 / 5e-65 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10036833 [exp] 215 / 2e-64 AT3G02250 539 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 214 / 4e-64 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059600 [exp] 387 / 2e-131 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 289 / 7e-93 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 282 / 2e-90 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 221 / 4e-67 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 223 / 2e-66 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 218 / 6e-66 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 222 / 2e-65 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 214 / 2e-64 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 213 / 7e-64 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 213 / 1e-62 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033494 pacid=23143382 polypeptide=Lus10033494 locus=Lus10033494.g ID=Lus10033494.BGIv1.0 annot-version=v1.0 ATGCTGAACAGCAAATCCAATCTCCATGGGAGGAGCTCTTCTTCTTGGCTCTTCCGCTCTAGAAGGCTGACGCCGCTTACCGTCGCTGTTTACGCGATCT TCCTCTTTGCCTTCTCCATCTTCCTGTTTATGTTCAACACTGGCCGCATCTTGGATGACGATCCGGAATCCGTCCCGTTCTTCCCCTGTGAATCCTCCAT TTTCGACGAAGATTCACTCCCTGCATCTGATCAGGTGTCTGATCCAGCCGGTCTCTGGGATCATCAGGCTAGACGTGGATTGCGCCCTTGCCTCAACCCA CTGCTAAATTCAAAGATTGCAGATATGGTGGCAGTTGCACGAATCATGAATGCAACTTTGGTTATTCCTCAACTAGACAAGCGTTCCTTCTGGCAAGATT CAAGTACATTTACCGATATCTTCGATGAGGTTCATTTCTTCACAAGCCTAAAAGGTGACGTGAGGATTGTTAAAGAGCTCCCGAAAGAATTGCAGACCAT TCCTCATGCTAGGAAACACTTCACTTCATGGTCAGCATGGGCTATTATGAAGAAATGGCACATATATGGAATGACTTCCAGTTATGGTGACTTATCAACC AAGAATTTACTGCAGGTGGTTCATGCTCCAAAATCAGATTCTCGTCTTGCAAACAATGATTTGCCACTCGATGTTCAGAGGTTGAGGTGCCGCGCGCTTT ATGATGCTTTACGATTCACGCCTCCAATTGAAAGCTTTGGCAAGAAGCTGGTGGAGCGGCTGAGGTTACGCGGTGAGAAATTCATTGCTCTTCATCTAAG ATACGAGAAGGACATGCTTTCTTTTACGGGGTGCACCTATGGACTGGAGAATACCAACCACTGGAAACTTAAGAAAATAAACTCCACTGAACAAAGAATC GAAGGCTTGTGTCCTCTTACTCCAGGAGAGCAGGAGAAATATATGGCGGTGAATCTCATCTCCAAGAGCTCCGGTCTCGCTTCCCAAACATTGTTTCAAA GCGATATCTTCGTTCCTTCACACTCCGGCAACGTGGCAAGAGTCGTTGAAGGCCACCGGAGATTTCTCGGCCATCGTAAGACCATCAACCCAGACAGGCA AGGAGGACCAAGGAAAAGGAAAGCTGCAGCATCAGGGATCAAAGGGAGAGCACGTTTCAAGACAGAGGAGTCGTTTCATCAGAACCTATATCCAGAGTGC ATCTGCAAATCCAAATGA
AA sequence Show only first row Show all	>Lus10033494 pacid=23143382 polypeptide=Lus10033494 locus=Lus10033494.g ID=Lus10033494.BGIv1.0 annot-version=v1.0 MLNSKSNLHGRSSSSWLFRSRRLTPLTVAVYAIFLFAFSIFLFMFNTGRILDDDPESVPFFPCESSIFDEDSLPASDQVSDPAGLWDHQARRGLRPCLNP LLNSKIADMVAVARIMNATLVIPQLDKRSFWQDSSTFTDIFDEVHFFTSLKGDVRIVKELPKELQTIPHARKHFTSWSAWAIMKKWHIYGMTSSYGDLST KNLLQVVHAPKSDSRLANNDLPLDVQRLRCRALYDALRFTPPIESFGKKLVERLRLRGEKFIALHLRYEKDMLSFTGCTYGLENTNHWKLKKINSTEQRI EGLCPLTPGEQEKYMAVNLISKSSGLASQTLFQSDIFVPSHSGNVARVVEGHRRFLGHRKTINPDRQGGPRKRKAAASGIKGRARFKTEESFHQNLYPEC ICKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	0	1
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	1.4	0.7646
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	2.4	0.7253
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	10.6	0.7231
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	12.0	0.7166
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	15.5	0.6882
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	21.2	0.6660
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	21.4	0.6621
AT3G20720			unknown protein		Lus10011166 [exp]	22.6	0.7251
AT5G04270			DHHC-type zinc finger family p...		Lus10037973 [exp]	27.0	0.6505
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	27.5	0.7088

Compare expression of checked genes

Lus10033494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.