Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44420 365 / 7e-126 protein N-terminal asparagine amidohydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020880 [exp] 671 / 0 AT2G44420 361 / 3e-124 protein N-terminal asparagine amidohydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G023200 [exp] 431 / 1e-151 AT2G44420 412 / 3e-144 protein N-terminal asparagine amidohydrolase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033495 pacid=23143465 polypeptide=Lus10033495 locus=Lus10033495.g ID=Lus10033495.BGIv1.0 annot-version=v1.0 ATGATCTACGTCGGTGACGACGAGATTCTATTTCCAGTCGGTTCCTCCAGTCAGGAAAGGGATGCTCTGTTGCTGGAACTGATCAGACATCCCATGGTGG TTGAAGCGTCAAACGCATTCAAGTGTTTACCAGAGAGGAAATTCTCGACTGATAAGGATCCTGGATTACAGAATTGCAGATTTGTTTATCTGTTCCAAAG AGAACACGCTGCCGTTGACCCTACCCTTGTAGATTTCATTGGCACTGACGAATCAACGACTTGTGTAGGTCTTGTCATCCGAAACCGGAAAAACAGAATG ATATCTGTTTCTCATATGGATTCTCCAACTGTTGTCTCTATTGGCCTTGAACAGATGTTGTCACAACTCTCTGGCGACAGTTCTGATGCTGATTTTGATG TTCATGTAGTTGGTGGTTTTGAAGATGTTAAACCCAATTATGCTAGCAGCTCCTCTGTGTCTGAAAGACCATCAAAATTGGATGGTGTTTCTCTCCCCCT GTGTACCAAAATAATCAAAGCGTTGGGTCGTAGGCAGGAGAAGTTTCATATCAGAACCCTCTTTGTTCTTGAGCATAACACAAAGAGGGATTCACAAGGA ATCACGTATCCAATCTTTAACGGAGTCCTGGTTGAAACGTCCACTGGGTCTGTTTTCCCAGCCAGTTTTGATAGAACTACAAGATGCCCAGATGAGATAG TAAGGAGAATTCGTGTGTCAGCATCATACGAGGATCCAACATGGGAAGGAAAGCTGCTGGACACATACGACACTCGAACTGATAAGTTTGTAATTGCTTC CTGCACTTGGACCATTAACCAATTAATCGATGCTTTGGCACTGCAAGAACTTTCCGATGCAGAGATCCTTCTTCAGTGTTCTACTTCACCTTCTGCAGAA GGCCCTGATTTTGTTACTAATATGAAAAGGCAGTGTGAGTATCTATTCACACAACCAAAGTGGGAAGACACATTCCCAATGAAGGAAGCCAGAGTATTTG TTAGGAGTGACAAAGGAAGCTGGGATATGATTCCGCTGTCAAAGAAGGCTCCATAA
AA sequence Show only first row Show all	>Lus10033495 pacid=23143465 polypeptide=Lus10033495 locus=Lus10033495.g ID=Lus10033495.BGIv1.0 annot-version=v1.0 MIYVGDDEILFPVGSSSQERDALLLELIRHPMVVEASNAFKCLPERKFSTDKDPGLQNCRFVYLFQREHAAVDPTLVDFIGTDESTTCVGLVIRNRKNRM ISVSHMDSPTVVSIGLEQMLSQLSGDSSDADFDVHVVGGFEDVKPNYASSSSVSERPSKLDGVSLPLCTKIIKALGRRQEKFHIRTLFVLEHNTKRDSQG ITYPIFNGVLVETSTGSVFPASFDRTTRCPDEIVRRIRVSASYEDPTWEGKLLDTYDTRTDKFVIASCTWTINQLIDALALQELSDAEILLQCSTSPSAE GPDFVTNMKRQCEYLFTQPKWEDTFPMKEARVFVRSDKGSWDMIPLSKKAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	0	1
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	3.5	0.9566
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	3.9	0.9447
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	3.9	0.9616
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	4.7	0.9601
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10034134 [exp]	5.7	0.9364
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10012777 [exp]	6.5	0.9332
AT5G05330			HMG-box (high mobility group) ...		Lus10000418 [exp]	6.8	0.9400
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	8.4	0.9530
AT2G34930			disease resistance family prot...		Lus10024736 [exp]	10.6	0.9315
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	11.0	0.9538

Compare expression of checked genes

Lus10033495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.