Plant FIBer expression Database

Lus10033497 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16550 126 / 1e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002085
[exp]
193 / 2e-61 AT5G16550 202 / 2e-64 unknown protein
Lus10003850
[exp]
191 / 5e-61 AT5G16550 224 / 9e-74 unknown protein
Lus10020879
[exp]
137 / 7e-37 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G082300
[exp]
162 / 5e-50 AT5G16550 185 / 1e-58 unknown protein
PFAM info
Representative CDS sequence
>Lus10033497 pacid=23143267 polypeptide=Lus10033497 locus=Lus10033497.g ID=Lus10033497.BGIv1.0 annot-version=v1.0
ATGGGCGAATCAGAAGTAACCTCCTCGACCAACGGCGTCAAGAACAGTCGACACCGGAGCGACGACCTGACTCTCTTCGCCGTCCTGCATCGCACTCTGA
CGGAAATCTTCGCTCCCGCGGCCGGTGGCGTTTCTGCTCCACTGCTGCAGCGGATCAAGGCATCGCTGTCGGAGAACGGTCCGCTGTTGAAAGATGCTAC
CGCTAATACGGGACGGCAGATTCTGGTCTGGACTCGGAGCGGCAGCCCTCTCCGTGCTCTGCTCGTCATCTCCGTTGGGACGGTTGCTCTTATTGCCTCG
ACGGGAATGCTAGTCTTCATGCTTTTCTTCTTGGCAGCCATCTTCAACGCAGTTATCATCTCTCTTCTCGTGTCATTAGCGGCTGCTGGTGGCTTCTTGG
CCCTTTTCCTTGCCTGTCTGACTGCTGTTTATGTCGGGGCAATATCGATCGCAATATTCGTCATTTCAACTGCAACCATTTCGGCTATCATTGCTGTCCT
GGTGGCTTCAGGTTGGATGGCATTCTTCTGCAGCATTTGGTTATTGACAAAGAAGAGTGTAGGCATTGCCAAACACTCGCTGAGCTTTACTGGATCAGGT
ATCTCTGCTTGGAATACTCGCCACCAAAACCTGCCAGACAAAGAAGAATGA
AA sequence
>Lus10033497 pacid=23143267 polypeptide=Lus10033497 locus=Lus10033497.g ID=Lus10033497.BGIv1.0 annot-version=v1.0
MGESEVTSSTNGVKNSRHRSDDLTLFAVLHRTLTEIFAPAAGGVSAPLLQRIKASLSENGPLLKDATANTGRQILVWTRSGSPLRALLVISVGTVALIAS
TGMLVFMLFFLAAIFNAVIISLLVSLAAAGGFLALFLACLTAVYVGAISIAIFVISTATISAIIAVLVASGWMAFFCSIWLLTKKSVGIAKHSLSFTGSG
ISAWNTRHQNLPDKEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16550 unknown protein Lus10033497
[exp]
0 1
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Lus10038218
[exp]
2.8 0.8149
AT5G53590 SAUR-like auxin-responsive pro... Lus10005781
[exp]
7.0 0.7416
AT3G11690 unknown protein Lus10029349
[exp]
8.9 0.7180
AT1G09960 ATSUC4, SUC4, A... sucrose transporter 4 (.1) Lus10032815
[exp]
12.0 0.7783
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Lus10041300
[exp]
12.4 0.7114
AT5G15900 TBL19 TRICHOME BIREFRINGENCE-LIKE 19... Lus10003061
[exp]
13.3 0.7818
AT4G32530 ATPase, F0/V0 complex, subunit... Lus10000347
[exp]
16.2 0.7364
AT4G16444 unknown protein Lus10016696
[exp]
17.9 0.6834
AT3G02850 SKOR STELAR K+ outward rectifier, S... Lus10028039
[exp]
20.1 0.7257
AT3G15810 Protein of unknown function (D... Lus10038097
[exp]
23.2 0.7206

Lus10033497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.