Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24850 438 / 2e-152 CRY3 cryptochrome 3 (.1) AT3G15620 108 / 4e-26 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT1G04400 105 / 9e-25 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 96 / 2e-21 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT2G47590 69 / 1e-12 PHR2 photolyase/blue-light receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020878 [exp] 596 / 0 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10021188 [exp] 106 / 2e-25 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10011822 [exp] 106 / 4e-25 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 91 / 6e-20 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10033446 [exp] 90 / 1e-19 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 85 / 5e-18 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10000521 [exp] 75 / 5e-15 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10007880 [exp] 66 / 2e-11 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G277500 [exp] 463 / 2e-161 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.010G071200 [exp] 105 / 5e-25 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 102 / 1e-23 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.003G060000 [exp] 101 / 1e-23 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.005G164700 [exp] 101 / 2e-23 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.008G166632 [exp] 64 / 5e-12 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.002G204000 [exp] 64 / 3e-11 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.014G128500 [exp] 64 / 4e-11 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10033499 pacid=23143404 polypeptide=Lus10033499 locus=Lus10033499.g ID=Lus10033499.BGIv1.0 annot-version=v1.0 ATGGCGTCTACCTCATCCACAACCACTTGCCCAGTGCCCGAAATCGCCGCCGACGAAACGGAACGAATCGCCGAGCAGACCTTTCAGAGATACTCTTCAA ACAATACAAGCAAAAGAAACGGCTCGGGAACCGCCGCTCAGGTTAGCAAAGGGATGAGGTTTGTTGGAGGTGAGACTGCTGCAATAGGCAGACTGCATGA ATACTTGTGGCACAAGGCAAGATTGTTTTACGAAATATCAACAGACTTGCTTTGCGTGTATAAGGAGACGAGGAACGGGATGCTAGGATCCGATTACTCC ACCAAATTCTCCCCCTGGCTGGCCTCTGGATGCATTTCGCCGCGCTTCATCCACCAAGAGGTGAAGAGGTATGAAATGGAGAGGCTAGCAAATGCTTCCA CTTACTGGGTATTGTTCGAGTTACTCTGGAGAGATTACTTCCGGTTTATCTCGATCAAACATGGAAACTCCATTTTCCAGTTAGGCGGGCCAAGAAGAGT TGTGAAAAGATGGAGTCAGGACCAGAAGCTGTTCGAATCCTGGCGAGATGGCTGTACAGGTTATCCTTTGATAGATGCTAACATGAAGGAACTGTCCGCT ACCGGTTTCATGTCAAATCGAGGAAGGCAGATAGTATGCTCATTCCTGGTTAGGGACATGGGTATAGACTGGAGAATGGGGGCCGAATGGTTCGAGACTT GCCTCTTAGATTATGATCCCTCTTCTAATTATGGCAATTGGACATATGGTGCAGGGGTTGGAAATGATCCGAGAGAAGATCGATATTTCAGCATCCCAAA GCAAGCACAGAGCTATGATGCTGAAGGAGAGTATGTGTCATACTGGATCCCCCAGCTGCAAAAGCTGCGCAAGGACTCGCGTAACTTTCCTGGGAAATCG TACATCGATCAAGTTGTACCTCTCAAGTTTGGTGCCAAACCTAATTATAAGAGCCATGCTCAAGCCAGAGCTACCAGATCAGGAAACAAGAGACTTAACT GA
AA sequence Show only first row Show all	>Lus10033499 pacid=23143404 polypeptide=Lus10033499 locus=Lus10033499.g ID=Lus10033499.BGIv1.0 annot-version=v1.0 MASTSSTTTCPVPEIAADETERIAEQTFQRYSSNNTSKRNGSGTAAQVSKGMRFVGGETAAIGRLHEYLWHKARLFYEISTDLLCVYKETRNGMLGSDYS TKFSPWLASGCISPRFIHQEVKRYEMERLANASTYWVLFELLWRDYFRFISIKHGNSIFQLGGPRRVVKRWSQDQKLFESWRDGCTGYPLIDANMKELSA TGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPSSNYGNWTYGAGVGNDPREDRYFSIPKQAQSYDAEGEYVSYWIPQLQKLRKDSRNFPGKS YIDQVVPLKFGAKPNYKSHAQARATRSGNKRLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10033499 [exp]	0	1
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	1.0	0.9524
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10035332 [exp]	5.7	0.8933
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	6.3	0.9099
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	7.7	0.9023
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	10.0	0.8895
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	10.0	0.8992
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	11.2	0.8975
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	11.6	0.8835
AT3G52740			unknown protein		Lus10017046 [exp]	12.0	0.8922
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	12.7	0.8947

Compare expression of checked genes

Lus10033499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.