Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63800 751 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT1G77410 738 / 0 BGAL16 beta-galactosidase 16 (.1) AT4G36360 582 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G16730 580 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 573 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G28470 566 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 559 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 550 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 545 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT2G32810 540 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033502 [exp] 1128 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10020877 [exp] 1118 / 0 AT2G16730 733 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10020875 [exp] 1063 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10028538 [exp] 754 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 743 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 728 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 700 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10014126 [exp] 598 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10025980 [exp] 594 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069200 [exp] 854 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.005G180600 [exp] 778 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 764 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 726 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.004G174800 [exp] 611 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 605 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 577 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 568 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 566 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G018100 [exp] 562 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10033500 pacid=23143372 polypeptide=Lus10033500 locus=Lus10033500.g ID=Lus10033500.BGIv1.0 annot-version=v1.0 ATGGAGAAGTACTACTACTGTATTGGGTTATGGGCGGCTTTAATGGTGATGGTGGCGGCGGCAGTGGTTGCCGGAAGGATTGTGACGTATGATGGAAGGG CATTGATAATCAATGGTGAAAGGAGGATGTTGTTTTCCGGTTCCATTCACTATCCTCGTAGCACTCCTCAGATACATATGTGGAGATCTTTGATTGCAAA AGCCAAGCAAGGAGGAGTGGACGTTATTGAAACCTATGTCTTCTGGAACCTCCATGAGCCCCGACCCGGCCAGTATGATTTCAGTGGAAGAAACGACATA GTGAGATTCATAAAGGAGATCCAGGCACAGGGCATGTACGTTGCTCTCCGGATCGGTCCCTTCATCGAGAGCGAGTGGACGTACGGAGGCCTTCCGTTCT GGCTTCATAGCATCCCTGGCATTGTTTACATAACCGATAATCAACCTTTCAAGAGAGCTATGCAGAGCTTCACCACGAAGATAGTGACTCTGATGAAATC GGAGGGTCTTTTCGCCTCGGATGGAGGCCCTATACTATTGGCACAGATCGAGAATGTGTATCAAAATGTCGAGGCGGCATTCGCAGAGGGGCCATCCTAT GTGAAGTGGGCAGCTAATATGGCAGTTGAGCTCCAAACTGGTGTCCCTTGGGTTATGTGCAAGCAGACTGATACTCCCGACCCTCTGATAAACACATCTA ATGGTATGAGATGCGGACAGACTTTCACGGGGCCTAACTCACCATCAAAGCCTGCACTTTGGACGGAGAACTGGACATCATTCCTACAACGGTTCGGAGA GGAAACGTCTCTGAGATCGGCTGAAGACATTGCCTTCTATCATGGAGGGACTCATTTCGGGAGAAGCGGATCAGCATATATGGCGATAAGCTATTACGAC CAAGCTCCTCTTGATGAATACGGTTTAACCAGAGAGCCGAAATGGAGCCATCTCAAGGAGATGCACGCTGCGGTTAAATCGTGTTCGTCGACATTGCTAA ATGGAGTCAAGACAAGCATCTCCCTGGGACGATTCCAGCAGGCATATGTCTATGAAGAATCGAGAGCTACGAAGGGAAACTGTGCAGCATTTCTAGTTAA CAGTGGAAGCCAGAATGCAGCATTTGTGTTTCGAAATGCAAAATTTGAGCTTCTACCTCATTCGATTAGCATTCTTCCTGACTGTCGAAACGTAGTCTAC AACTCGGGCAAGGCGGGTTCAGGATTCAGCAACAGAAGGGAAACTATAAGCAAGATTCTGGAAGGTAGAGCGAATCGATGGGAAGAATTCAGAGACCCCG TACCGAGTTTCTTTGACAGCAAGATAAGGTTCAATCAACTAGAGGAGCAAACTGGCATAACCAATGATTTGTCTGATTACTTTTGGTACACGTTGAGCCA AATTCCAAGTCTTGCGCGAGTGAGGCTTCTGTCACATGTCATGTATGCCTATGTCAATGGCAAATATGCAGGTTCAGATATAGGGAACTCAGGAACTCAG AAGACGGCAGGCCTGCTTGAAGCTCCAATCTCATTAGGTCAAGCAATGAACAGTATTTCCATACTGAGTGCCATGGTGGGACTATGGGATTCGGGAGCTT TCCTGGAGAAGAGACGTGCAGGATTAACTGATGTAGAAATCCAATGCAATGGTATTTCACAGATTGTTACAAGTCATGCCTGGGGCTATAAGGTGGGTTT TGAAGGAGAGAGCTTAGAAATATACAGGCCGAAAAATACTGATAGAGTCCGATGGGGTCCAATCTCTCGCAATGTTGACAGATCACCCAAGTGGTTCAGA ACAACATTTGATGCACCTCTGGGAGATGAACCAGTGGCACTAAACCTAAGCAGCATAGGAAAAGGACAAGCATGGGTGAATGGACAGGGCATAGGGCGCT ATTGGGTTTCCATTAAAACGAAGAAAGGAAATCCTTCTCAGACACTGTACCATGTTCCGAGGGAGTTCTTAAATCCCAAGGACAATCTACTAGTAATACA GGAAGAATCCACCAGGAATCCGTTCCAAATTACTGTTGTTACCATATCAACTACCACCAAAAATGGAATGACCTTTTCCCTAGTAGATTCTTTACATTAT TCATACGTAGACATACTTTAG
AA sequence Show only first row Show all	>Lus10033500 pacid=23143372 polypeptide=Lus10033500 locus=Lus10033500.g ID=Lus10033500.BGIv1.0 annot-version=v1.0 MEKYYYCIGLWAALMVMVAAAVVAGRIVTYDGRALIINGERRMLFSGSIHYPRSTPQIHMWRSLIAKAKQGGVDVIETYVFWNLHEPRPGQYDFSGRNDI VRFIKEIQAQGMYVALRIGPFIESEWTYGGLPFWLHSIPGIVYITDNQPFKRAMQSFTTKIVTLMKSEGLFASDGGPILLAQIENVYQNVEAAFAEGPSY VKWAANMAVELQTGVPWVMCKQTDTPDPLINTSNGMRCGQTFTGPNSPSKPALWTENWTSFLQRFGEETSLRSAEDIAFYHGGTHFGRSGSAYMAISYYD QAPLDEYGLTREPKWSHLKEMHAAVKSCSSTLLNGVKTSISLGRFQQAYVYEESRATKGNCAAFLVNSGSQNAAFVFRNAKFELLPHSISILPDCRNVVY NSGKAGSGFSNRRETISKILEGRANRWEEFRDPVPSFFDSKIRFNQLEEQTGITNDLSDYFWYTLSQIPSLARVRLLSHVMYAYVNGKYAGSDIGNSGTQ KTAGLLEAPISLGQAMNSISILSAMVGLWDSGAFLEKRRAGLTDVEIQCNGISQIVTSHAWGYKVGFEGESLEIYRPKNTDRVRWGPISRNVDRSPKWFR TTFDAPLGDEPVALNLSSIGKGQAWVNGQGIGRYWVSIKTKKGNPSQTLYHVPREFLNPKDNLLVIQEESTRNPFQITVVTISTTTKNGMTFSLVDSLHY SYVDIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	0	1
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	1.0	0.8587
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	3.5	0.8406
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	5.8	0.7932
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	6.8	0.7660
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	6.8	0.8494
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	7.5	0.8011
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	8.9	0.7926
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	12.5	0.7472
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	14.4	0.8095
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	14.5	0.7927

Compare expression of checked genes

Lus10033500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.