Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33480 249 / 9e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020876 [exp] 387 / 9e-135 AT4G33480 308 / 6e-104 unknown protein Lus10003851 [exp] 216 / 2e-67 AT4G33480 293 / 2e-97 unknown protein Lus10002086 [exp] 198 / 6e-60 AT4G33480 285 / 1e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099900 [exp] 239 / 1e-76 AT4G33480 340 / 3e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12527 [flax] [poplar] DUF3727 Protein of unknown function (DUF3727)
Representative CDS sequence Show only first row Show all	>Lus10033501 pacid=23143285 polypeptide=Lus10033501 locus=Lus10033501.g ID=Lus10033501.BGIv1.0 annot-version=v1.0 ATGGCGATATCTTCCATCTCCTCTATCCCCACAGCAATTCACCAGCTCCTCCTCAAATCCAACCTTCTCTCTCCTCCCTCCTTCCTCCCCCCTTCTTCCT TCTCGTTTCCCGCCTGCACAATCTCCATCTCTAACCCCGTCACCTTACCTTCTCTCGCCGTATGCCGAGCTTCCACCTCCTCATCTTCATCTTCCTCCTC GCCTCGCAAGACGACCACGAAGCCAAAGAAGAAGAAGAAGAAAAGCGGCGCCGCTTTGCAAAATTTGAGCTTGACCGATGTTGAAGTTGTCAAAGCTCCC GACGACGACGACGTCGATTCCAATTATGATGATTTCGACGACGTCGAAAGCCATGGTGTCTCAAGGTACCGTCCTCAACCGCCTACTCCAATGCCCAAAC CGCCCACCGGCTTTCACGTATCCCCCTCCGGCAAGGTCTCCATGACTTCCGAAAACCGGATTACCACAATTGTTGATGCTGCAAATAATAGTCCGTTAGA GTGCATAATAAGGAGGGTGTCTAAAACTTCACAAGGGGCTGACTGTATGCTACTTTGCCCGGCTGATACGCCGATTTATGTGTTAAAGAGTAGTGCCGTT GATGGATGGACGGCGGCCAGTGATGATGAAGTGGAGGCTATCCTTCCAGCTGCTGCATACGCTTTGGCAAAGATACATTTGCATCTTGTCCATAGCGGAT TCTGTTACACATTAAGGGGAGCATTCTTTTTCTCAGAGGATGACATCTTTGATTTCAGTACAGATGACGAAGGAATTGCAGCTGGCTTACCAACAGAGGG TGTTGAAATTACATACTTCCATCTTGACGGTGAACATTTTATGTTATATACACCATTAGAGCCAATTCTTTTTGTTGCCGTTAAGGATCAAGATGGGGTG TTGCAAATCGCCAATGATGAACTATTGGATGACCCGGCTATCATCAGCATGATTGACGAGGAGACTGAATTTAATGCTCTGGTGGAGGAAGAAGCTGCTC TGATGAATTCTTTGATGGGCAAGGAGTGA
AA sequence Show only first row Show all	>Lus10033501 pacid=23143285 polypeptide=Lus10033501 locus=Lus10033501.g ID=Lus10033501.BGIv1.0 annot-version=v1.0 MAISSISSIPTAIHQLLLKSNLLSPPSFLPPSSFSFPACTISISNPVTLPSLAVCRASTSSSSSSSSPRKTTTKPKKKKKKSGAALQNLSLTDVEVVKAP DDDDVDSNYDDFDDVESHGVSRYRPQPPTPMPKPPTGFHVSPSGKVSMTSENRITTIVDAANNSPLECIIRRVSKTSQGADCMLLCPADTPIYVLKSSAV DGWTAASDDEVEAILPAAAYALAKIHLHLVHSGFCYTLRGAFFFSEDDIFDFSTDDEGIAAGLPTEGVEITYFHLDGEHFMLYTPLEPILFVAVKDQDGV LQIANDELLDDPAIISMIDEETEFNALVEEEAALMNSLMGKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33480			unknown protein		Lus10033501 [exp]	0	1
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	2.0	0.8724
					Lus10040882 [exp]	9.5	0.8728
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	16.1	0.8474
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	18.7	0.8213
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	22.3	0.8584
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	22.3	0.8457
AT3G51510			unknown protein		Lus10033303 [exp]	24.5	0.8512
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10003953 [exp]	25.7	0.8172
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	29.9	0.8492
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	31.4	0.7891

Compare expression of checked genes

Lus10033501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.