Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63800 840 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT1G77410 824 / 0 BGAL16 beta-galactosidase 16 (.1) AT4G36360 636 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G16730 634 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G35010 633 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G28470 625 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 619 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 605 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT1G45130 605 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G32810 600 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020875 [exp] 1293 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10020877 [exp] 1126 / 0 AT2G16730 733 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10033500 [exp] 1115 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10028538 [exp] 818 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 802 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 784 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 784 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10014126 [exp] 651 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10024292 [exp] 648 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069200 [exp] 950 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.005G180600 [exp] 859 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 857 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 825 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.009G134400 [exp] 676 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 673 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 640 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 636 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 631 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 618 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10033502 pacid=23143532 polypeptide=Lus10033502 locus=Lus10033502.g ID=Lus10033502.BGIv1.0 annot-version=v1.0 ATGGACTGTGGGCGGAGGTGGAGCTGGTTATGGGCGGCGTCTGTGATGATGGCGGCAGCGGCGGCGGTGGTTGCCGGGGGGAATGTGACGTATGATGGAA GGGCATTGATAATCGACGGTGAAAGGAAGATGCTGTTTTCTGGTTCGATTCACTATCCTCGTAGCACTCCTCAGATGTGGGGATCTTTGATTGCAAAAGC CAAGCAAGGAGGAGTGGACGTTATTGAGACCTATGTTTTCTGGAACCTCCATGAGCCCCAACCCGGCCAGTATGATTTCAGTGGGAGAAACGATATAGTG AAGTTCGTAAAGGAGGTCCAGGCACAAGACCTGTACGTTGCTCTTCGGATCGGTCCCTTCATCGAGAGCGAGTGGACTTACGGAGGCCTTCCCTTCTGGC TTCATAACATCCCTGGCATTGTTTACAGAACCGATAACGAACCTTTCAAGAGAGTTATGCAGAGCTTCACCACGAAGATAGTGGATCTCATGAAATCGGA GGGCCTGTTCGCTTCGCAAGGCGGCCCTATAATATTGGCACAGATCGAGAACGAGTATCAAAACGTCGAGGCAGCATTCGCAGAGGGGCCATCATATGTG AAGTGGGCAGCTAATATGGCAGTTGAGCTCCAAACTGAAGTCCCGTGGGTTATGTGCAAGCAGACCGATGCTCCCGACCCTGTGATAAACACATGTAACG GTATGAGATGCGGAGATACTTTCACAGGGCCAAACTCACCATCAAAGCCTGCACTTTGGACGGAGAACTGGACATCATTCCTACAACGGTTCGGAGAGGA AACGTACCTGAGATCGGCGGAAGACATTGCCTTCCACACCTTACTCTTCATCGTTGCCAAGAACGGAAGCTTTATCAACTACTACATGTATCATGGCGGG ACTAATTTCGGGAGAAGTGGGGCAGCGTATATGGTGACAAGCTATTACGACCAAGCTCCGATCGACGAATATGGTTTGATCAGGGAACCGAAATGGAGCC ATCTCAAGGAGATGCACGCTGCGGTGAAATTGTGTTCGTCGACATTGCTAAATGGAGTCAAGTCAAGCTTCTCCCTCGGAGAATTCCAGCAGGCATATGT ATACGAAGACTCGAAAAGCTGTGCAGCATTTCTGGTTAACAGTGGAAGCAAGAATACGACAGTTGTGTTTCGAAATGCGACATTTGAGCTGATACCTAAG TCGATTAGCATTCTTCCCGACTGTCGAAACGTGGTCTACAACTCGGGCAAGGCGAGTTCAGGATTCAGCAACAGAAGGGAAACTGTAAGCAAGATTCTGG ATGGTACAGAGAATCTATGGGAAGAATACAGAGATCCCATACCGAGTTTCGCAGACACTTCGATAAGGTTCAATCAACTGGAGGAGCAAACTAAAATAAC AAATGATTCTTCTGATTACCTTTGGTACACGTTGAGCTTTCAGCCAAATTCTGCGTCTTGCGCAGCAGCAAAATTGCGAGTGAAGTTTCTGTCACATCTT ATGTATACCTATGTCAACGGAAACTATACAGGTTCAGCTATAGGGAACTCAGGGGATCAGAGGAAGGAAGTCCAGATTGAAGCTTCAATCTCACTAGGTC AAGCAATGAACAATATTTCCATACTGAGTGTTATGGTGGGACTGTGGGATTCTGGACCTTTCATGGAGAAGAGGCGCGCAGGATTAACTGATGTAGAAAT CCAATGCGATGATTTTACATACAATGTTACAAGCAATGACTGGGGCTATCAGGTGGGTTTTGAAGGAGAGAGCTTAGAAATATACACCAAGAAAAATACT GATAGGGTGGAATGGGATCCGATCTCTCTTAATGCTGATACATCACCCAAGTGGTTCAGAACAACATTTGATGCACCTCTGGGAGATGAACCAGTGGCAC TGAACCTGAGCAGTATGGGGAAAGGACAAGCATGGGTGAATGGAGAGGGCATAGGGCGCTATTGGCTTTCCATTAAAACCAAGAATGGAAATCCTTCTCA GACACTGTACCATGTTCCAAGGGAATTCTTAAATCCAAAAGACAATCTACTGGTAATACAGGAAGAATCCACAGGGGATCCATTCCAAATTACTCTGGTT ACCATATCAACTGCCAAAATGGGAAAACAGACGTCCAGAAATTATTTTATCGGTTGA
AA sequence Show only first row Show all	>Lus10033502 pacid=23143532 polypeptide=Lus10033502 locus=Lus10033502.g ID=Lus10033502.BGIv1.0 annot-version=v1.0 MDCGRRWSWLWAASVMMAAAAAVVAGGNVTYDGRALIIDGERKMLFSGSIHYPRSTPQMWGSLIAKAKQGGVDVIETYVFWNLHEPQPGQYDFSGRNDIV KFVKEVQAQDLYVALRIGPFIESEWTYGGLPFWLHNIPGIVYRTDNEPFKRVMQSFTTKIVDLMKSEGLFASQGGPIILAQIENEYQNVEAAFAEGPSYV KWAANMAVELQTEVPWVMCKQTDAPDPVINTCNGMRCGDTFTGPNSPSKPALWTENWTSFLQRFGEETYLRSAEDIAFHTLLFIVAKNGSFINYYMYHGG TNFGRSGAAYMVTSYYDQAPIDEYGLIREPKWSHLKEMHAAVKLCSSTLLNGVKSSFSLGEFQQAYVYEDSKSCAAFLVNSGSKNTTVVFRNATFELIPK SISILPDCRNVVYNSGKASSGFSNRRETVSKILDGTENLWEEYRDPIPSFADTSIRFNQLEEQTKITNDSSDYLWYTLSFQPNSASCAAAKLRVKFLSHL MYTYVNGNYTGSAIGNSGDQRKEVQIEASISLGQAMNNISILSVMVGLWDSGPFMEKRRAGLTDVEIQCDDFTYNVTSNDWGYQVGFEGESLEIYTKKNT DRVEWDPISLNADTSPKWFRTTFDAPLGDEPVALNLSSMGKGQAWVNGEGIGRYWLSIKTKNGNPSQTLYHVPREFLNPKDNLLVIQEESTGDPFQITLV TISTAKMGKQTSRNYFIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	0	1
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	2.0	0.8912
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10021856 [exp]	2.0	0.8798
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10033678 [exp]	2.4	0.8799
AT3G18950			Transducin/WD40 repeat-like su...		Lus10023836 [exp]	4.0	0.8871
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	5.2	0.8498
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	5.3	0.8649
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	5.9	0.8688
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	7.7	0.8434
					Lus10008674 [exp]	8.5	0.8684
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	11.3	0.8637

Compare expression of checked genes

Lus10033502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.