Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33490 536 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 408 / 1e-140 Eukaryotic aspartyl protease family protein (.1) AT1G77480 375 / 2e-127 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 278 / 1e-87 Eukaryotic aspartyl protease family protein (.1.2) AT3G02740 143 / 8e-38 Eukaryotic aspartyl protease family protein (.1) AT1G65240 142 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT5G36260 129 / 8e-33 Eukaryotic aspartyl protease family protein (.1) AT2G36670 129 / 2e-32 Eukaryotic aspartyl protease family protein (.1.2) AT1G05840 125 / 3e-31 Eukaryotic aspartyl protease family protein (.1) AT5G22850 120 / 1e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020874 [exp] 793 / 0 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 390 / 3e-133 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 387 / 8e-132 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 292 / 5e-93 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 237 / 2e-72 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 189 / 2e-56 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 126 / 2e-31 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 125 / 2e-31 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 125 / 3e-31 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069600 [exp] 558 / 0 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 558 / 0 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 546 / 0 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 395 / 3e-135 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 389 / 3e-132 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 301 / 1e-96 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 139 / 4e-36 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 126 / 1e-31 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 119 / 3e-29 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 117 / 2e-28 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10033503 pacid=23143409 polypeptide=Lus10033503 locus=Lus10033503.g ID=Lus10033503.BGIv1.0 annot-version=v1.0 ATGGCAAAAGGGAAATTGGTGCTTCTGGTTCTTGTCGTTGCTATGTCGATTGTGGGGTTTGCGTCTGGTTCAGGTGATGGGAGTGGTTGGGATTGGAGGA AGGCAATTTTAGCTAGAGGAGGTGATGATGATGTTGGTGGTGGTGAAGCTTCGACTTCTTCAATGGCTTTCAATCGAGGAGTTGGTTCCTCTGTTGTGTT CCCGCTTCATGGCAATGTCTACCCAATTGGGTTCTACAATGTGACAGTGTACATAGGCCAACCACCAAAGCCTTACTTTCTTGATGTAGACACTGGAAGT GACCTCACTTGGCTCCAATGTGATGCTCCTTGTGTCCAATGCATTGAGGCACCTCATCCATATTACAGACCCTCCAATAACCTAGTTCCTTGCGAGGACC CCATATGCGCATCCTTACACCCACCTGGTCACAAATGTAAAGACAATGAACAGTGTGACTACGAAGTTGAGTATGCAGATGGTGGCTCATCCCTTGGCGT CCTTGTCAAAGACATGTTTCTTCTCAACTTCACCAATGGTAGATATCACAATCCTCTTCTCTCACTCGGATGTGGATACGATCAACTTCCAGGAGGGTCT TACCATCCTATAGACGGTGTGCTTGGACTTGGCAGTGGCAAAGCTGGAATCTTGTCTCAACTTAGCAGTTATGGTGTACTAAGGAATGTAGTTGGCCATT GTTTAAGCAGTAGAGGTGGAGGATTTCTCTTTTTCGGTGATGATGTTTACGATTTGTCTAGAGTTTCCTGGACACCGATGTTGCGCCATGATTCAAAGCA CTATTCTCCTGGATATGCTGAGCTGATGTTTGGCGGGAAAGCAACTGGAATAAAAAACCTGCTTATAGCTATAGACAGTGGGAGCTCCTACACTTACTTC GGCTCCAAGGCATATCAAGTACTGATTCAGCTAGTGAACAAAGAACTATCAGGAAAACCATTAAGAGAAGACTGGAATGACCATACTCTCCCAGTTTGCT GGAAAGGGCAGAGACCTTTCAAAAGCATTCGCGACGTGAGGAAATACTTCAAGCCTTTGACACTCACCTTTAGAGATGGTTGGAGATCCAAGACGAAATA CGAAATCCCACCGGAATCTTACCTGATCATCTCTTCGAGGGGAAATGTGTGCTTGGGGGTTCTGAATGGAACTGAGGTTGGCTTGCAGGATCTCACTGTC CTCGGAGACGTCTCGATGCAAGATCGAATGGCGATCTATGACAATGAGAGACAAATGATTGGATGGAGTGACGCAAACTGTGATCGAATTCCCAAGTTCT CTTCTGTCTTCTGA
AA sequence Show only first row Show all	>Lus10033503 pacid=23143409 polypeptide=Lus10033503 locus=Lus10033503.g ID=Lus10033503.BGIv1.0 annot-version=v1.0 MAKGKLVLLVLVVAMSIVGFASGSGDGSGWDWRKAILARGGDDDVGGGEASTSSMAFNRGVGSSVVFPLHGNVYPIGFYNVTVYIGQPPKPYFLDVDTGS DLTWLQCDAPCVQCIEAPHPYYRPSNNLVPCEDPICASLHPPGHKCKDNEQCDYEVEYADGGSSLGVLVKDMFLLNFTNGRYHNPLLSLGCGYDQLPGGS YHPIDGVLGLGSGKAGILSQLSSYGVLRNVVGHCLSSRGGGFLFFGDDVYDLSRVSWTPMLRHDSKHYSPGYAELMFGGKATGIKNLLIAIDSGSSYTYF GSKAYQVLIQLVNKELSGKPLREDWNDHTLPVCWKGQRPFKSIRDVRKYFKPLTLTFRDGWRSKTKYEIPPESYLIISSRGNVCLGVLNGTEVGLQDLTV LGDVSMQDRMAIYDNERQMIGWSDANCDRIPKFSSVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	0	1
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	1.0	0.8335
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	5.1	0.8149
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	10.7	0.8033
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	12.2	0.7350
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10017024 [exp]	15.1	0.6468
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	15.5	0.6734
AT4G33490			Eukaryotic aspartyl protease f...		Lus10020874 [exp]	17.3	0.7618
AT5G57910			unknown protein		Lus10036591 [exp]	18.2	0.7759
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	18.5	0.7756
AT2G23390			unknown protein		Lus10010689 [exp]	19.7	0.7780

Compare expression of checked genes

Lus10033503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.