Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 189 / 1e-53 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 175 / 1e-48 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G03680 157 / 4e-42 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT1G33240 141 / 4e-36 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT3G10000 120 / 2e-29 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 112 / 2e-26 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 109 / 4e-26 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 62 / 4e-10 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 57 / 7e-09 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 55 / 4e-08 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020873 [exp] 719 / 0 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 166 / 3e-45 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 148 / 2e-39 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 150 / 3e-39 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 149 / 6e-39 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 145 / 1e-37 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10028582 [exp] 119 / 1e-29 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 115 / 4e-28 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 115 / 4e-28 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309100 [exp] 389 / 3e-131 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 364 / 1e-121 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 176 / 3e-51 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049700 [exp] 179 / 1e-49 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 176 / 1e-49 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 178 / 2e-49 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 174 / 4e-48 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.006G221400 [exp] 165 / 1e-44 AT1G76890 162 / 1e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 160 / 4e-43 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.011G147400 [exp] 146 / 1e-37 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033504 pacid=23143477 polypeptide=Lus10033504 locus=Lus10033504.g ID=Lus10033504.BGIv1.0 annot-version=v1.0 ATGGAAGTTTCACCTGCACCGCAAACTGGCGGCGGGGCGGCGGCGGAAGAGTACTCAGGTGGCAGGAATCGGTGGCCATCTCGAGAGACTGTAGCTCTAT TGAGGATAAGGTCCGAAATGGATGCAAGTTTCAAAGACTCCGGCCTCAGAGGTCCTCTCTGGGAAGAAATCTCCAGGAGAATGAGTGAGCTAGGGTTTTC CAGGAGTGCGAAGAAATGTAAGGAGAAGTTCGAGAACATTCAGAAGTACCATAAGAGAACTAAAGAAGGGAGGTCTAGACGGCAGAATGGAAAGAGCTAT AAGTTCTTTCAGCAGTTGGAAGCTATAGATAGCCATAGCCATAATTCGCAACTGGCTAAGGTTCTAGCTGCTGATTCAGTCAACCAGACGAGTGGTGGTG GTGGCGGTGCGATCGATGCTACTCCGTGCTCGGTTTACAGCCCGGTTCGAATGCATTTCCTAGATAGCACCTCAACATCGACCACATCCACTACACCGAG TAAAGAAGAAGAAGAATCGGAAGGTACGAGGAAGAAGAAGAGGAAACTGACAGAGTTCTTCGATTCTCTGATGGCTAGAGTGATTGAGAAGCAGGAAAGC TTGCAGAGGAAGTTCGCCGAGGCAGTGGAGAGATTCGAAAGGGACCGGATGGCTAGGGACGAAGTGTGGAAGTTGAAGGAATTGGAGAGGATTAAGAGAG AGCGGGAATTACTAGTTCGAGAAAGGGAGACCGTAGCTGCAAAAGATGCAGCTGTGCTCTCTTTCCTGCAGAAGTTCACGAACCAAACCGTATCATTGCC ATTGCCAATCCCGGTGAGACATCCAGAGAAGCTCCCTGTTCCGAAAATGCAGACCACCGCAGCAGAGGGATTTGTTCCTCCAGCGAGGTGGCCGAAGGAA GAGATTGAAGTGCTGATAAAGGTGAGGACTAGTTGCGAAGTGAAGTACCAAGGGCACGGGCCGAAGGGGCCTCTGTGGGAGGAAGTATCGGCTGAGATGA GGAGATTAGGGTACAACAGGAACCCCAAGAGGTGCAAGGAGAAGTGGGAGAATATGAACAAGTATTTCAAGAGGGTGAAAGAGAGCAGGAGCAGTAAGGC AAGGCCCGAGGATTCGAAAACATGCCCGTATTTCCATCAGCTCGATGCTCTATACAGCGGGAAGACAATGAATCCCGACTCTTCCTCTGCCAATTCCGGT GGCAGCGAGTTGAAGCCTGAAGAGCTCTTGATGCACATGATTCGCCGACAGGAAGAACTACAGCATCCCGAATCGGCAACAACTGACGATGGCAGGGAAA AGCTGAATGTGGAGGAGAAAGAAGAGAGCGATGGATACCGGAATGATCCAAGAGCCATGATGGAACAATCACCCGAAAGAGATGACAGGAGAGTTGAATG GACATGA
AA sequence Show only first row Show all	>Lus10033504 pacid=23143477 polypeptide=Lus10033504 locus=Lus10033504.g ID=Lus10033504.BGIv1.0 annot-version=v1.0 MEVSPAPQTGGGAAAEEYSGGRNRWPSRETVALLRIRSEMDASFKDSGLRGPLWEEISRRMSELGFSRSAKKCKEKFENIQKYHKRTKEGRSRRQNGKSY KFFQQLEAIDSHSHNSQLAKVLAADSVNQTSGGGGGAIDATPCSVYSPVRMHFLDSTSTSTTSTTPSKEEEESEGTRKKKRKLTEFFDSLMARVIEKQES LQRKFAEAVERFERDRMARDEVWKLKELERIKRERELLVRERETVAAKDAAVLSFLQKFTNQTVSLPLPIPVRHPEKLPVPKMQTTAAEGFVPPARWPKE EIEVLIKVRTSCEVKYQGHGPKGPLWEEVSAEMRRLGYNRNPKRCKEKWENMNKYFKRVKESRSSKARPEDSKTCPYFHQLDALYSGKTMNPDSSSANSG GSELKPEELLMHMIRRQEELQHPESATTDDGREKLNVEEKEESDGYRNDPRAMMEQSPERDDRRVEWT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10033504 [exp]	0	1
AT2G44870			unknown protein		Lus10020395 [exp]	2.4	0.8104
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	5.7	0.7611
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	8.4	0.7806
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	24.1	0.7417
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	29.0	0.7113
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	29.7	0.7668
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	31.4	0.7752
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10011849 [exp]	32.1	0.7386
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	34.3	0.7409
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	38.1	0.6737

Compare expression of checked genes

Lus10033504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.