Plant FIBer expression Database

Lus10033505 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18800 221 / 7e-74 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020872
[exp]
316 / 3e-111 AT3G18800 261 / 2e-89 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G006500
[exp]
287 / 6e-100 AT3G18800 249 / 5e-85 unknown protein
Potri.001G309000
[exp]
265 / 2e-91 AT3G18800 244 / 6e-83 unknown protein
PFAM info
Representative CDS sequence
>Lus10033505 pacid=23143504 polypeptide=Lus10033505 locus=Lus10033505.g ID=Lus10033505.BGIv1.0 annot-version=v1.0
ATGGCGGAATACGAAATCCACCACAACCACAATCAGCACCAAGGGATCCCGAAGGAGACAGCATTCCAAGCTCTCAACACTATAATCCAGCTCCACTTCG
AGAAAACCTTGGAGAAGAAGCGAGCAATCGACCTCCAGAAGAAGGAGCTCTATAAATTCTTCCTCCTGTTCTTCATCTTCCTCTCCCTCGTCTTCTCCGG
ACAAGCTCAGTCCTCCCGCCTCCAGTGCCGCCACTGCTGGGTGCCGATCACTCTTCTCTCCTTGGCCCACCTCATCTTCTACGTCGCCGTCGCCCAAACC
CTAAGGTGCATCAATGGATTTAAGTACCAGCGCCGCTGCCACAAGCTAACGCTTGCGCTCGCTACTGAGAAGCTTCGGGACCTCAAGATGAGGACCGGCG
GGGGAGGCGGAGGTGGAGGGGAGTATGGAGAGATGATTGTGGTGGGGGATGAGGCGGAGCTTGAGATTCATTACCAGGAGCCGCCGGAGAGTTATTTCGG
GAAATTTAAGAGGAATTGGGCGTTGCATTTTGGATTCTTGATTTTTATCTATGGGTTTATGATCTCCTCCTCTGTTGTTATTCTCTGCTTTTGA
AA sequence
>Lus10033505 pacid=23143504 polypeptide=Lus10033505 locus=Lus10033505.g ID=Lus10033505.BGIv1.0 annot-version=v1.0
MAEYEIHHNHNQHQGIPKETAFQALNTIIQLHFEKTLEKKRAIDLQKKELYKFFLLFFIFLSLVFSGQAQSSRLQCRHCWVPITLLSLAHLIFYVAVAQT
LRCINGFKYQRRCHKLTLALATEKLRDLKMRTGGGGGGGGEYGEMIVVGDEAELEIHYQEPPESYFGKFKRNWALHFGFLIFIYGFMISSSVVILCF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18800 unknown protein Lus10033505
[exp]
0 1
AT3G63030 MBD4 methyl-CPG-binding domain 4 (.... Lus10027980
[exp]
2.0 0.9424
AT1G68400 leucine-rich repeat transmembr... Lus10035138
[exp]
6.0 0.9300
AT3G18800 unknown protein Lus10020872
[exp]
7.4 0.9293
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10041347
[exp]
9.9 0.9332
AT3G58690 Protein kinase superfamily pro... Lus10017647
[exp]
10.4 0.9297
AT4G38210 ATHEXPALPHA1.23... EXPANSIN 20, expansin A20 (.1) Lus10013849
[exp]
11.0 0.9261
AT1G61170 unknown protein Lus10018461
[exp]
12.6 0.8995
AT3G20390 endoribonuclease L-PSP family ... Lus10040074
[exp]
13.3 0.8773
AT4G37090 unknown protein Lus10000742
[exp]
13.8 0.8876
AT5G48480 Lactoylglutathione lyase / gly... Lus10009580
[exp]
15.9 0.8939

Lus10033505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.