Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18465 94 / 8e-23 Chaperone DnaJ-domain superfamily protein (.1) AT3G58020 77 / 1e-16 Chaperone DnaJ-domain superfamily protein (.1) AT2G42080 76 / 5e-16 Chaperone DnaJ-domain superfamily protein (.1) AT5G16650 42 / 7e-05 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020871 [exp] 440 / 2e-158 AT2G18465 115 / 1e-30 Chaperone DnaJ-domain superfamily protein (.1) Lus10016258 [exp] 96 / 2e-23 AT2G42080 213 / 5e-69 Chaperone DnaJ-domain superfamily protein (.1) Lus10029287 [exp] 92 / 3e-22 AT2G42080 206 / 5e-66 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010000 [exp] 199 / 3e-63 AT2G18465 150 / 4e-44 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G308900 [exp] 177 / 1e-54 AT2G18465 149 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 42 / 4e-05 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G041400 [exp] 39 / 0.001 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10033506 pacid=23143352 polypeptide=Lus10033506 locus=Lus10033506.g ID=Lus10033506.BGIv1.0 annot-version=v1.0 ATGCAAGTTCCCAGATGGCGAAACGTGTTAATCCTGAAGAACAACTTGATTCCAGCTCTTTCTCAATCGAAGAAGACCATCATCGCCTCGATTCATTCGA CCCCGGTTTTCTGCGATAGATGGAACACCAAGGGGAAATCTAATCATGTGAGATTTGCAGTGCGTCAAAAACGTGCCGACACCAAGAAGGCTTTGAAGCA CCTTCTCTTCAATAGTAAATCCTCCGGACTGTCTCAGGTTGAACGACTATGGAACTTTGGTGCAGAAGACCGAACCACTGCTGACAATAAAAGGCATGGG AAATCTCCTGGTCAGAATGCTAACAGGAGAGGTCATTGTGCCAAAATAAAGCGCAAGTTTCGAAGAGACAGTTGCGACGAAGATTCAGATGATCCAGAAT CCGTATTCCAAGCGAAATTTGGAAACAAGTGGTATACTTGGTCCTTCGGCGGGTCTGGCTCCGGACGGTCCAAAAGGACAGAGTCTCCACATTGGACATG GAGAAACCCTAGGGTAGAATTTGACCATCGAGGTGAACCTGAATCTGACGAAGAAGAGCCACCTGTCATCGTTGGATCATGTTCGGACAGAAGAACCCTC AGGTTGCCACTTTCTGGACCTCTGCAGATTGAAGAAGTGAAAACTGCGTTTCGAATTTCGGCATTGAAATGGCATCCGGACAGGCACAAAGGGGATTCCC AGGCTATGGCTGCAGAGAAGTTTAAACTGTGTGTTAGTGCTTACAAATCTCTCTGTTCAGTTCTGTCGTGA
AA sequence Show only first row Show all	>Lus10033506 pacid=23143352 polypeptide=Lus10033506 locus=Lus10033506.g ID=Lus10033506.BGIv1.0 annot-version=v1.0 MQVPRWRNVLILKNNLIPALSQSKKTIIASIHSTPVFCDRWNTKGKSNHVRFAVRQKRADTKKALKHLLFNSKSSGLSQVERLWNFGAEDRTTADNKRHG KSPGQNANRRGHCAKIKRKFRRDSCDEDSDDPESVFQAKFGNKWYTWSFGGSGSGRSKRTESPHWTWRNPRVEFDHRGEPESDEEEPPVIVGSCSDRRTL RLPLSGPLQIEEVKTAFRISALKWHPDRHKGDSQAMAAEKFKLCVSAYKSLCSVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10033506 [exp]	0	1
					Lus10024688 [exp]	7.1	0.6201
					Lus10013098 [exp]	17.0	0.6067
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	23.7	0.5532
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	23.8	0.6383
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10034077 [exp]	45.3	0.6102
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	56.2	0.6007
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10022245 [exp]	58.3	0.5605
AT2G34050			unknown protein		Lus10007055 [exp]	58.9	0.5039
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	76.0	0.5551
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	80.8	0.5438

Compare expression of checked genes

Lus10033506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.