Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24090 283 / 1e-93 RNase H family protein (.1) AT5G51080 261 / 3e-85 RNase H family protein (.1.2.3) AT3G01410 257 / 4e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G27870 52 / 2e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G42905 51 / 4e-07 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G04625 48 / 3e-06 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27220 44 / 7e-05 paired amphipathic helix repeat-containing protein (.1) AT3G25270 44 / 8e-05 Ribonuclease H-like superfamily protein (.1) AT2G13980 40 / 0.0007 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020869 [exp] 706 / 0 AT1G24090 297 / 8e-99 RNase H family protein (.1) Lus10014521 [exp] 231 / 1e-73 AT3G01410 245 / 2e-80 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10032166 [exp] 192 / 8e-59 AT3G01410 214 / 2e-68 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10027418 [exp] 39 / 0.0006 ND 37 / 0.001
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00075 [flax] [poplar] RNase_H RNase H
Representative CDS sequence Show only first row Show all	>Lus10033508 pacid=23143407 polypeptide=Lus10033508 locus=Lus10033508.g ID=Lus10033508.BGIv1.0 annot-version=v1.0 ATGAACTGCTTGTCTAGGTTGTCTGCATACTCCGCAGCTATCATTGGAGGGAAGAGCCATCTCATTGTGAAGCAATCCTGGAACCAGTGCTCTAATCTTG TTTGGAATCAGCACAATTCTTTCAGAAGTCTAAACAAGGAGTTAAGCTTTCCCACAGTTGCTACCCGGTGTTACTCAACCCAGAAGGCTAAATCAACAAA AGTTCTGCAAAAAGAAAACTCGGATCAGATAGAAACTGATATGGATAGAGATTCTTTCTTCTTGGTGCGAAAAGGGGATGTCGTTGGTGTTTACAAGACT TTTAATGAGTGCGAGTCGCAAGTCGGATCCTCTATATCTGACCCTCCGGCAAGCATTTTCAAAGGGCATGCTTTAACTGATGAAACCAAAGAGTACCTTG CATCTTGTGGGCTTCAGAATGCTTTATATACTGTCAGAGCACAAGACTTGAAGGCGGACCTATTCGGCACACTTGTGGCTTGTCCTTTGCCACAACCTAG TCTCTCCACTGATCAACCAGATGCAACATCTGGTAAGAAGAGAACGATAGATACGATGATATTACAAGCAGCAGAAGCATGTGCAACTTCATCCGGTCAA GCTGATCCCTCAAAAAATCTTGTGAGATCGGATTATCAAGTTGCTACTCATCAATATTCTTATGATCCAGAATTTTGTACTCTTGAGTTTGATGGTGCTT CAAGAGGAAACCCTGGACCAGCAGGTGCTGGAGCTGTTTTGCGGACAAGTGATGGAACTTTGATTTGCAAGTTGCAAGAAGGATTAGGCCGCAAGACTAA CAACGTTGCTGAGTATAAGGCAGTTCTTCTTGGCCTGAGATATGCTCTCCAAAGGGGATATAGAAAAATACGCATACAAGGTGACTCCAAGCTCGTGTGT TCACAGGTTGATGGTACGTGGAAAGTCAAACACCAAGGCATGGCCGAGCTATGCGATCAGGTCAAAGAGCTAAAGGGAAGATTCGTTAACTTCGAGATTA AGCACGTTCTAAGGGAATTCAACTCTGAAGCTGATGTGCAGGCAAACCTTGCTGTCGAACTTCAAGGTGACCGAACCCGGTCTAGAGCAATCAATGGCAT TCAGGTTTAA
AA sequence Show only first row Show all	>Lus10033508 pacid=23143407 polypeptide=Lus10033508 locus=Lus10033508.g ID=Lus10033508.BGIv1.0 annot-version=v1.0 MNCLSRLSAYSAAIIGGKSHLIVKQSWNQCSNLVWNQHNSFRSLNKELSFPTVATRCYSTQKAKSTKVLQKENSDQIETDMDRDSFFLVRKGDVVGVYKT FNECESQVGSSISDPPASIFKGHALTDETKEYLASCGLQNALYTVRAQDLKADLFGTLVACPLPQPSLSTDQPDATSGKKRTIDTMILQAAEACATSSGQ ADPSKNLVRSDYQVATHQYSYDPEFCTLEFDGASRGNPGPAGAGAVLRTSDGTLICKLQEGLGRKTNNVAEYKAVLLGLRYALQRGYRKIRIQGDSKLVC SQVDGTWKVKHQGMAELCDQVKELKGRFVNFEIKHVLREFNSEADVQANLAVELQGDRTRSRAINGIQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	0	1
AT2G37690			phosphoribosylaminoimidazole c...		Lus10022004 [exp]	1.7	0.9197
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	3.9	0.9047
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	8.5	0.8789
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	8.9	0.8779
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	9.2	0.9046
AT2G37690			phosphoribosylaminoimidazole c...		Lus10042546 [exp]	9.4	0.9058
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	13.4	0.8710
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	13.6	0.9016
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001704 [exp]	15.2	0.8355
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	18.5	0.8763

Compare expression of checked genes

Lus10033508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.