Plant FIBer expression Database

Lus10033509 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020868
[exp]
127 / 9e-35 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10033509 pacid=23143509 polypeptide=Lus10033509 locus=Lus10033509.g ID=Lus10033509.BGIv1.0 annot-version=v1.0
ATGGGAGGCTGCGCCACCAAGCCAAAAGTCACCAAAGACGACAAACTTCCGGCGCCGGCGCCTGAGCCCAAGCCAGCCACCACCGTCACGACGTCACCGC
CGGTAACTGATCCAGCTACCACCTCAACAACAACACCTGCGCCGGAGGAGCCTAAGAAAGCAGAGGAGATTATAGCTGCTCCTTCAACCGCCGTGGAGGT
GGTGGAGAAGGAAATCGTGGTCGTTGGCGGCGGCGGAGAAGGAGAGATCGTCGACGATGAGGCCGCCGCCAAGCGTCGCTCTCTCAGCAATCTGTTCAAA
GAGAGTGGTGAAGGAAAGGAGACCGTTGTAGAAGAAGAGAAGGAAAAGCCGGCGGATGTGAAAACAGAGGCGGCGGAGGAGAAAACAACACCACCGGCGG
CACCAACAGAGGATACAAAAACAGAGGCGGAAGAGAAAACAACACCACCGGCAGCAGCAGCAGCAGAAGCAGAGGATGTAAAAACAGAAGCGGAGGAGAA
AATAACCCCACCACTAGCAGCAGAAGCAGAGGATATAAAAACAGAGGCGGCAGAGGAGAAAATAACACCACCGGCAGCAAAGACAGAGGAGGCCGTAAAA
GCAGAGCACACAGATAACAAGGAGTTGCCGACAGAGGGAGAAGCAGAGCCGAAAGAGATTAACGTCGTTGAGGTTGACGGCAAAGAAGAAGAAGTTTCAG
TAGCGGAGAAAATAACACCACCGGCGTCAGCAAAGACGGAGGATGCCGTAAAAGCAGAGGCTGAAGATGATAAAAAGGAGTCACAGACAGAGGGAGAAGC
AGAGCCCAAAGAGATTAACGTAGTCGTCAAAGTTGACGGCGAAGAAGAAGTTAAACAAAAAGAAGAAGTTTCAGTAGTGGCGGAAACAGAGTCGCCAGCT
GTTACACCATTGCCGGAGAAGGAGGAGGCATCGATTATTAGTACTGTTGACGTTGATGATCAGAAGCCAGTTGCTGCGGCTGTGGAGCCGGTGAAGGCGG
CGGAGGAGGTTGAAGCGCCGCCGGCGGAAGTGGTTAAAGAGACTGTTTCTGTAAGTTGA
AA sequence
>Lus10033509 pacid=23143509 polypeptide=Lus10033509 locus=Lus10033509.g ID=Lus10033509.BGIv1.0 annot-version=v1.0
MGGCATKPKVTKDDKLPAPAPEPKPATTVTTSPPVTDPATTSTTTPAPEEPKKAEEIIAAPSTAVEVVEKEIVVVGGGGEGEIVDDEAAAKRRSLSNLFK
ESGEGKETVVEEEKEKPADVKTEAAEEKTTPPAAPTEDTKTEAEEKTTPPAAAAAEAEDVKTEAEEKITPPLAAEAEDIKTEAAEEKITPPAAKTEEAVK
AEHTDNKELPTEGEAEPKEINVVEVDGKEEEVSVAEKITPPASAKTEDAVKAEAEDDKKESQTEGEAEPKEINVVVKVDGEEEVKQKEEVSVVAETESPA
VTPLPEKEEASIISTVDVDDQKPVAAAVEPVKAAEEVEAPPAEVVKETVSVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033509
[exp]
0 1
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Lus10001519
[exp]
2.4 0.9260
AT2G02061 Nucleotide-diphospho-sugar tra... Lus10031330
[exp]
2.8 0.9306
Lus10026715
[exp]
3.5 0.9286
AT4G09720 AtRABG3a RAB GTPase homolog G3A (.1.2.3... Lus10028719
[exp]
3.5 0.9212
AT5G02100 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OS... Lus10010843
[exp]
4.5 0.9021
AT5G25265 unknown protein Lus10041028
[exp]
7.3 0.8948
AT5G10720 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histi... Lus10000105
[exp]
8.9 0.8944
AT1G19360 RRA3 reduced residual arabinose 3, ... Lus10042340
[exp]
12.5 0.9062
AT1G52140 unknown protein Lus10006040
[exp]
13.0 0.9152
AT4G39660 AGT2 alanine:glyoxylate aminotransf... Lus10004480
[exp]
13.2 0.8874

Lus10033509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.