Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64700 300 / 3e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 221 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08290 172 / 3e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 164 / 2e-47 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 161 / 4e-46 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 157 / 7e-45 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 157 / 2e-44 WAT1 Walls Are Thin 1 (.1.2) AT1G21890 154 / 2e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 148 / 2e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT2G40900 147 / 1e-40 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020867 [exp] 219 / 4e-71 AT5G64700 127 / 8e-36 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028585 [exp] 194 / 8e-59 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018889 [exp] 190 / 3e-57 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10041634 [exp] 178 / 4e-52 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028586 [exp] 180 / 3e-51 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018890 [exp] 167 / 4e-50 AT1G43650 237 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008706 [exp] 172 / 5e-50 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 168 / 1e-48 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 168 / 1e-47 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004100 [exp] 337 / 6e-115 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 318 / 2e-107 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G068300 [exp] 236 / 4e-75 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G192100 [exp] 229 / 2e-72 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148600 [exp] 195 / 9e-60 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 178 / 2e-52 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 174 / 2e-51 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 166 / 4e-48 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 165 / 9e-48 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 164 / 5e-47 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10033510 pacid=23143412 polypeptide=Lus10033510 locus=Lus10033510.g ID=Lus10033510.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGGGGAGAGACCAAAACGACGCCGTCCAACGGCAAGAAGGCGCGTGGAGCTGTGATATTGATACAGTTACTCTACGCCGGAATGTTTCTGC TCTCTAAGGTGGCCTTCGACGGTGGCTTCAAAACTTCCATCTTCGTCTTCTACCGTCAAACCTTCGCCGCCGCCGTCCTCGTCCCTCTTGCTCTTGCATT CGAGTGGATTACGTTGACCTTAAACATAAATGGCCTAGCTTTGACTTACACGTCAGCAACTTTGGCCGCAGCCAGCGTCAACTCTCTTCCGGTCATTACT TTCTTCTTGGCTTTACTATGCAGAATGGAGACACTAAAGGTGAGGACTAGAACAGGGATAGCAAAGCTGGTAGGGATTGGGATATGCATGGGTGGAGTAG CACTTCTTGCTTTCTACAAAGGCCCACATTTCAACCTCCACCTTTGCCTCTTTAGACATCTTCACCATGCCCAAATCCCCACTACTAGTACTCCTCCTCA GCATAACACATGGATCAAAGGCTGCTTCTTGATGCTCTTCTCCCACATCACTTGGGGCTTTTGGCTCGTCTTTCAGGCAATACTTCTGAAAAGCTACCCA TCAAAGCTGATGTTCACAGCCCTACAATGCTTTCTAAGCGCAATTCAGTCCTTTGTGGTTGCTATTGCTGTTGAGAGGAATCCTGACGAGTGGAAGCTCG GGTGGAACACCAGACTCGTCGCAGTGGCCTACTGCGGGATAGTTGTGACAGGAGTAACGTATTACTTGCATGCTTGGGTGCTTGAGAAGAAAGGGCCAGT CTTCTTGGCCATGTCCACTCCTCTGGCTCTCATATTCACTATGGTCTGTTCCGCACTTCTATGCGACTTCATCACCCTCGGAAGTATTCTGGGTGGAGCG CTGTTGGTTGGAGGGCTTTACAGTGTTTTGTGGGCAAAAGGCAGAGAAGAGAAGATGATCCATCATGATGACGATGATGAGATTCAGAAGATCCCGAAGG TGGCTGCAGAATCAGAGCTCAAAGAAATTATGACAACTGATTAA
AA sequence Show only first row Show all	>Lus10033510 pacid=23143412 polypeptide=Lus10033510 locus=Lus10033510.g ID=Lus10033510.BGIv1.0 annot-version=v1.0 MEGGGETKTTPSNGKKARGAVILIQLLYAGMFLLSKVAFDGGFKTSIFVFYRQTFAAAVLVPLALAFEWITLTLNINGLALTYTSATLAAASVNSLPVIT FFLALLCRMETLKVRTRTGIAKLVGIGICMGGVALLAFYKGPHFNLHLCLFRHLHHAQIPTTSTPPQHNTWIKGCFLMLFSHITWGFWLVFQAILLKSYP SKLMFTALQCFLSAIQSFVVAIAVERNPDEWKLGWNTRLVAVAYCGIVVTGVTYYLHAWVLEKKGPVFLAMSTPLALIFTMVCSALLCDFITLGSILGGA LLVGGLYSVLWAKGREEKMIHHDDDDEIQKIPKVAAESELKEIMTTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	1.4	0.9497
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	2.4	0.9304
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	2.8	0.9207
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	3.0	0.9302
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	5.0	0.9098
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10012444 [exp]	6.6	0.8369
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	6.9	0.9024
					Lus10015658 [exp]	8.8	0.8971
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	8.9	0.8967
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	9.5	0.8941

Compare expression of checked genes

Lus10033510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.