Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09840 519 / 7e-170 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 342 / 1e-103 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G62210 152 / 5e-41 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 155 / 7e-39 Putative endonuclease or glycosyl hydrolase (.1) AT5G61180 141 / 1e-36 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 146 / 1e-35 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT3G60940 119 / 9e-30 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 105 / 7e-25 Putative endonuclease or glycosyl hydrolase (.1.2) AT2G15560 98 / 5e-21 Putative endonuclease or glycosyl hydrolase (.1) AT3G62050 75 / 2e-15 Putative endonuclease or glycosyl hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020866 [exp] 1481 / 0 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10009982 [exp] 142 / 8e-35 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 104 / 4e-23 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 67 / 3e-12 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 0 / 1 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307700 [exp] 624 / 0 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 607 / 0 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 162 / 2e-42 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 156 / 9e-41 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 157 / 9e-40 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 155 / 2e-39 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 149 / 4e-37 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 105 / 3e-23 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 101 / 5e-22 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10033511 pacid=23143493 polypeptide=Lus10033511 locus=Lus10033511.g ID=Lus10033511.BGIv1.0 annot-version=v1.0 ATGATCGCGAAGAAGGCTTTCTCTTCATCCAAATCCCTGCCATCTCCTCCGCCGTCGGTCATCATTTCTTACTTCTCCACCTCATCCGCTCAGTCTCACC AGCATTTCCAGTCTCGGAGGCATCAACAGGAGGAGGAATCCAGGAACGTGAGGATATCGGTTTGGTGGGATTTCGAGAATTGCCACCCTCCGCCGGGTGC CAATGCGTTCGGAATTTCGCAGATGATCACCGCCGCCGTTCGTGCCAACGGGATGAAGGGCCCCATTCAGATCACGGCCTTCGGCGACGTGTCCCAGCTT TCAAGGTCTAGCCAGGAAGCGCTTTCTTCTACCGGAATCAACATGACTCATGTTCCCAGTGGAGGAAAGAACAGTGCAGACAGGTCTCTTCTAGTGGATC TGATGTATTGGGTGTCCCAGAATCCACCACCTGCACATCTGTTTCTGATTTCTGGTGATAGGGACTTCGCTAGTACGTTACACCGGTTGAGGATGAACAA TTACAACATATTGCTTGCGTCGATAGAAACCGCTCCTAGCGTTCTCTGCAGTGCTGCCAGTATCATGTGGCGTTGGAATGAATTAGTGAAGGGAGCGAAC TTAACCGGGAAGTATGTCAATCAACCTCCTGATGGTCCTTATGGTTCCTGGTATGGCCAGTACAAGTTACCCTTGGAAGACCCCTTTACCGTTGGAGCTG AACCTTCCCCACCATCACCGAGCCCCGAGGTTGAGCAGAGTATTGATTCGGAGACCACGATACGCGATATACCGAAAGCATTGAAAAAGCAGATCCGTCA AGTTTTGAGTTTGTACCCTGAAGGGATGTTGATATCGGAGTTTCGTATGGAGTTGCAGAGAAGGAACATTGCTATTGATAAGAAATTCTATGGGCATAAG AAGTTCTCATCCTTTCTCTTGGCCATGCCACAACTTTTCAAGCTGCAGAAGATTGGAGATGGTAAGTTCCTTGTACAGCTACTCCATGCTAAAGATCTTG AAACACCTGATCCTCTCTCTTCAACAGCTATTGATATACTGAATAATGTGAATTCACTTCCTTCCAACTCTTCCAAGCTGGAGGATACCAATAGTGAAGC TGAGAATTTGGCATCCCTGGAGAGAAAAATTAGCGTGCCTGAAAAAGAAGTGCAAGAACCTGCAAGAGCTGTCAACTGGAAGGAATCGACTTATCCTGTT GATGAAAAAGTCTTACGAAAGTCTAATGCGTTGGAGACAAATAAGCAGACGTCTCAAGTGAGGAAGGAAGAACATGTTAGTGAACATGTCCCTGATAAGA AGGAATCCATCCGTCCTGTTAGTGAACAGGTATCAAAGAAGTTGTCTTCTGGTGGTGGGGTTTTTAATACGATCCGGAGAATTTGGTCTGGTAGCTCCAA GAAGGAAACTGAAGACTCTCTAGAAATTCCTAATAACAAGCTTGGAGGGGAAGCTGTTAATAATAAGAAGCTTGCGTCATCCTGCTATGAACCTAATGTT TATTCAAGGCTCGGGAGTAAAAGCGACAGAATATCAGAAGAAGCATACAGTGAAAGCTTGACAGAGAACAGTGCCAGCGAAGATTCGACCCGAAGTCCAG GTTTGCTTAGTAGGATTAACAATTGGTGGAAATCCAGGGGAACTAGTCTCGAATCCATAGACAAGCAACCCAACGAAATCCTCGATCAGAGAAATGTTAG TGCTCTAAATCATGAGCTCTATTCTAAGGACTCTTTCTGGAGCGAGATGGAGCCCTTTATCAGGACTCAGAAGGGATCACTCGCTATAACAAAATCAAAG TCAAGGGAAGAAATGGCAACAAACCTGCAAAAGGAGGGGCCTTTCGTGCTTAAATCCCTCAAGGAAAGTGACCTAATTCTGTTAGTAGATATCCTGATAT CAGCAAAGAAATGGGTGGATGAATGTCCTTCTGAAGCTTCCCCTTTTAAGGTCACTCTCTCTGTTGATAATGCTGCCCCGAATGATGATCCTCGAGGTCG TTCAAATGGTCTGAGATCGTCGTTCCTGCATGAAGCACTGCTACCTCCCAGTGATCTGAAATCTATCGAGCGGTCCAGAGGCGATATATTAAAGGACTGT AGGAATCTCGCGCAAGAGATAGTGAAGGAATTCCCATATGGATATAGCATAGGTTTATTCCAGAAGGAATTCATCAACAGGTATGGGTATTATCTTGATG TTCGGAAGCTTGGCTACCAAAAGGTGGCATCTTTGTTAGAAATAATGCCAGGTGTGAGAGTTGAGTTTACCTACATTTACCCTATGGAATCACTTAAGGC TCCGAAGAAGGACGATGAATCAGATTCCGGATGGGATGAACTAGGTCCTCTTGACAGTGGAAGCACAGAATCAGAACAACCGAGTCCTTCATACGAGCCT TGCCTTTCGGACGATTGCCTGACAGAGTCTTCATCGTCCGACTCTGAGGACGAGAGGCCGGTGAGTAGTACTCAGCCAGAATCCTGGGTGAAGAAGTGCA ATGCAAGTGAGGATAAGAGTTCGTTACTAGAGATTCTTGATGTATGCTATGACAGTAAGAATGGAGAATCCGGAAACAAGAAAGTCGACGAGGATTATGC TGATGCAGATGAGGAGAAGAAGGTTGTTGACTCTCCGAGCAGCATTCGAGGTAGTGTTAGTTGTGGTAGAAGGGGTGAGAGTCGAATGGGATATGGTAAT CCTGGAGGAATGCAGAGGCTTGTGAAGTCTTATTCTTTTGTTGAGGATCCAGTTGTGGAGGAGCAGCATAAACTGATAGATGGCATCTTAACCAGCTTAA AGAAAACAAGTGAGACCAGGATGCATAGCTGA
AA sequence Show only first row Show all	>Lus10033511 pacid=23143493 polypeptide=Lus10033511 locus=Lus10033511.g ID=Lus10033511.BGIv1.0 annot-version=v1.0 MIAKKAFSSSKSLPSPPPSVIISYFSTSSAQSHQHFQSRRHQQEEESRNVRISVWWDFENCHPPPGANAFGISQMITAAVRANGMKGPIQITAFGDVSQL SRSSQEALSSTGINMTHVPSGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASTLHRLRMNNYNILLASIETAPSVLCSAASIMWRWNELVKGAN LTGKYVNQPPDGPYGSWYGQYKLPLEDPFTVGAEPSPPSPSPEVEQSIDSETTIRDIPKALKKQIRQVLSLYPEGMLISEFRMELQRRNIAIDKKFYGHK KFSSFLLAMPQLFKLQKIGDGKFLVQLLHAKDLETPDPLSSTAIDILNNVNSLPSNSSKLEDTNSEAENLASLERKISVPEKEVQEPARAVNWKESTYPV DEKVLRKSNALETNKQTSQVRKEEHVSEHVPDKKESIRPVSEQVSKKLSSGGGVFNTIRRIWSGSSKKETEDSLEIPNNKLGGEAVNNKKLASSCYEPNV YSRLGSKSDRISEEAYSESLTENSASEDSTRSPGLLSRINNWWKSRGTSLESIDKQPNEILDQRNVSALNHELYSKDSFWSEMEPFIRTQKGSLAITKSK SREEMATNLQKEGPFVLKSLKESDLILLVDILISAKKWVDECPSEASPFKVTLSVDNAAPNDDPRGRSNGLRSSFLHEALLPPSDLKSIERSRGDILKDC RNLAQEIVKEFPYGYSIGLFQKEFINRYGYYLDVRKLGYQKVASLLEIMPGVRVEFTYIYPMESLKAPKKDDESDSGWDELGPLDSGSTESEQPSPSYEP CLSDDCLTESSSSDSEDERPVSSTQPESWVKKCNASEDKSSLLEILDVCYDSKNGESGNKKVDEDYADADEEKKVVDSPSSIRGSVSCGRRGESRMGYGN PGGMQRLVKSYSFVEDPVVEEQHKLIDGILTSLKKTSETRMHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	0	1
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	1.0	0.9582
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	2.0	0.9382
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	2.4	0.9418
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	3.0	0.9287
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	3.5	0.9427
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	4.0	0.9288
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034789 [exp]	5.4	0.9086
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	6.3	0.9380
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	8.5	0.9366
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	9.9	0.9063

Compare expression of checked genes

Lus10033511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.