Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30920 394 / 6e-138 ATCOQ3, EMB3002 embryo defective 3002, coenzyme Q 3 (.1) AT1G64970 46 / 2e-05 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G76090 44 / 0.0001 SMT3 sterol methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020863 [exp] 588 / 0 AT2G30920 410 / 3e-144 embryo defective 3002, coenzyme Q 3 (.1) Lus10009537 [exp] 42 / 0.0003 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10018010 [exp] 42 / 0.0005 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020357 [exp] 42 / 0.0006 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093100 [exp] 408 / 7e-144 AT2G30920 425 / 1e-150 embryo defective 3002, coenzyme Q 3 (.1) Potri.013G077000 [exp] 43 / 0.0002 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033512 pacid=23143368 polypeptide=Lus10033512 locus=Lus10033512.g ID=Lus10033512.BGIv1.0 annot-version=v1.0 ATGGCGGCAAAGCTTCTGACGAGACTCCGACAACTACACTCCCCGCAACCACACCGTCGAATCTTCCACGGTCTCCGGCTATTGTCCGGAGCTTCAATTT CTACCTCCTCTCCTCTACCTCCAACTCAAACACCGCCACCGCTCCCTCCTTCGCGTAGCGATGCAAATAGCACCGCAAACCCCGGCATGATCCACCACAA ACCGACGACGTCCTCTCTGAAGGAATACGAGCTCGCCAAATTCTCTGCGATCGCTGATACCTGGTGGGATGCCGATGGTCCGTTTAAACCGCTTCATGAG ATGAACCCTACCAGACTTGCTTTCATTCGCTCCACTCTCTGCCGGCATTTCAGGAAGAATCCGGAGTTGCCTAAACCATTTGAAGGACTCAAAATCGTTG ATGTTGGTTGTGGCGGTGGGATCCTTTCTGAGCCTTTGGCGCGATTGGGAGCAACCGTGACAGGAGTAGATGCGGTGGACAAGAATGTCAAGATCGCACG CCTTCACTCTGACTTGGACCCTTCAACTTCTACCATTGAGTATGTTTGCACAACTGCAGAAAAACTGGTTGAAGAAGGTAGGCAATTTGATGCTGTGATG GCACTAGAGGTAATTGAGCATGTAGCTGAACCAGCCGAATTCTGCAAGTCGTTAGCAGCATTAACTCGTCCAGGTGGAGCCGTTCTCATCTCGACTATAA ACAGATCTATGAGAGCATATGCTGCTGCTATTGTTGCAGCAGAATACATTCTCCACTGGCTTCCGAGGGGCACTCACCAGTGGTCGAGTTTCCTCACCCC TGAAGAGCTGGCCATGATCCTTAAACGGGCTTCGATCGATGTGGAAGAAATGGCTGGATTCGCGTTGAACCCTTTAACAGGGAGGTGGATTATATGTGAC GATGTCAGCGTAAATTTCATCGCTTTCGCCACCAAAAAGGCGGAACATGAAGGGCAAGAAGAATTCGTTGCATCGCAACCATCCATGTAA
AA sequence Show only first row Show all	>Lus10033512 pacid=23143368 polypeptide=Lus10033512 locus=Lus10033512.g ID=Lus10033512.BGIv1.0 annot-version=v1.0 MAAKLLTRLRQLHSPQPHRRIFHGLRLLSGASISTSSPLPPTQTPPPLPPSRSDANSTANPGMIHHKPTTSSLKEYELAKFSAIADTWWDADGPFKPLHE MNPTRLAFIRSTLCRHFRKNPELPKPFEGLKIVDVGCGGGILSEPLARLGATVTGVDAVDKNVKIARLHSDLDPSTSTIEYVCTTAEKLVEEGRQFDAVM ALEVIEHVAEPAEFCKSLAALTRPGGAVLISTINRSMRAYAAAIVAAEYILHWLPRGTHQWSSFLTPEELAMILKRASIDVEEMAGFALNPLTGRWIICD DVSVNFIAFATKKAEHEGQEEFVASQPSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10033512 [exp]	0	1
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	9.2	0.7707
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10035281 [exp]	11.8	0.7670
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	12.0	0.7658
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	13.0	0.7688
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	20.9	0.7399
AT4G30660			Low temperature and salt respo...		Lus10035809 [exp]	27.2	0.7282
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	29.5	0.7743
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10037070 [exp]	34.4	0.7416
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	40.0	0.7305
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	42.2	0.6371

Compare expression of checked genes

Lus10033512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.