Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63960 1743 / 0 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT1G67500 301 / 3e-84 ATREV3 recovery protein 3 (.1.2) AT5G67100 190 / 6e-49 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1) AT2G27120 50 / 1e-05 POL2B, TIL2 TILTED 2, DNA polymerase epsilon catalytic subunit (.1) AT1G08260 49 / 3e-05 ESD7, EMB142, EMB529, EMB2284, POL2A, TIL1, ABO4 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1) AT1G49180 0 / 1 protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020862 [exp] 1410 / 0 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10029911 [exp] 309 / 6e-87 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2) Lus10009366 [exp] 180 / 2e-45 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10019338 [exp] 172 / 4e-43 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10006269 [exp] 50 / 1e-05 AT1G08260 3052 / 0.0 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1) Lus10020576 [exp] 46 / 0.0002 AT1G08260 3067 / 0.0 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065800 [exp] 1855 / 0 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Potri.013G022200 [exp] 312 / 6e-88 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2) Potri.007G045300 [exp] 179 / 2e-45 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Potri.004G185700 [exp] 51 / 6e-06 AT1G08260 3196 / 0.0 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0194 [flax] [poplar] DNA_pol_B-like PF00136 [flax] [poplar] DNA_pol_B DNA polymerase family B CL0219 [flax] [poplar] RNase_H PF03104 [flax] [poplar] DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
Representative CDS sequence Show only first row Show all	>Lus10033513 pacid=23143449 polypeptide=Lus10033513 locus=Lus10033513.g ID=Lus10033513.BGIv1.0 annot-version=v1.0 ATGCTAGGAAGCGACCGCCGCGCCGGAAATGCTAGGAAGCGCCCGCCGCCGGCGAAGCCTCCGCAACCGTCGCCCGCAGCCAAGGTTCAGGCAAGAGGGC CGGAGGACGATTTCGTCGACGAGGATGTGTTTCTGGACGAAACCCTTATCGCAGAAGACGAAGGGAACATCAACAGTGAGTGGGCTCAGCAGTCTCTCGT CTCTCACCTGGCTAAATGGAAGCGTCCTTCGCTCTCTCCCGATTATGTTTCCCAGTCTAAAAGCATAACATTTCAGCAGTTAGAGCTAGATTATGTGGTT GGTGATAGCCGTAATGACTTGTTGGATAATTGGTCCGGACCTGCCCCGATTATCAGAATCTTTGGGGTTACAACAGAAGGTCATAGTGTGTGCTGCAATG TTCATGGATTTGAGCCTTATTTCTACATTAGTTGCCCTTCTGGAATGGGACCAGATGACATTTCTCGGTTTCATCAGGTTCTTGAGGCGAGAATGAAGGA GATGAACCGGAGTAGTAAAGTGTCAAAACTAATCAGGAGAATCGAACTGGTACATAAGAAGAGCATCATGTACTATCAACAACAGGACTCCAATCCTTTT CTTAAGATTGTTGTGGCATTTCCAGCAATGGTTGCAAGTTGTCGGGGTATTCTTGACAAAGGTATACATATAGACGGCCTTGGTACGAAGAGCTTCATGA CCTATGAAAGCAATGTTGTCTTTGCTCTCCGTTTCATGGTTGATTGTGGGATCGTTGGTGGGAACTGGATTGAAGTACCTGCTGGAAAATATAAGAAGGC AATCAAGAGCTTGTCCTATTGTCAATTAGAAGTTGACTGCTTGTACTCATCATTGATAAGCCATGTCCCGGAGGGAGAGTTCTCAAAAATGGCTCCTTTC CGGATATTGAGTTTTGATATCGAGTGTGCAGGACGTAAAGGTCACTTTCCCGAACCCACTCATGATCCTGTTATTCAGATTGCCAACTTAGTTACGCTGC AAGGGGAGAACCAACCATTTGTGCGTAATATCATGACACTAAAATCATGCTCACCCATTGTTGGTGCGGATGTGATGTCTTTTGATACCGAAAGAGAAGT CCTGCTAGCTTGGAGGGATTTAATTCGTGAAGTAGATCCGGATATAATCATTGGATATAATATCTGCAATTTTGACTTGCCATATCTCATTGAGAGGGCT CAAAGCTTAGGCATATCAGAGTTTCCAATATTAGGGCGCATTAGAAACTGCAGGGTTCGGGTCAGAGATGCAACTTTTTCGTCAAGGCAGTATGGAACAC GTGAAAGTAAAGAAGTTGCTTTAGAGGGGAGGGTCCAGTTTGATTTGCTCCAGGCTATGCAACGGGATTATAAATTGAGCTCTTATTCATTGAACTCCGT TTCAGCCCACTTTCTTTCTGAGCAGAAAGAGGATGTCCACCATTCAATAATATCTGATCTTCAAAACGGCAATGCAGAAACTAGGAGGCGGCTTGCTGTT TATTGTTTGAAGGATGCATACCTCCCGCAGCGACTTCTGGATAAACTGATGTACATATACAACTACGTAGAAATGGCTCGTGTCACTGGCGTACCTATAT CTTTTCTTCTCGCGAGGGGGCAGAGTATTAAGGTACTGTCTCAGCTCCTGAGGAAGTCTAAGCAAAAGGGTCTCTTAATTCCAAATGTCAAACAGGCAGG ATCTGATCAAGGAACATATGAAGGTGCAACTGTTTTGGAGCCTAAAGTGGGATTCTATGAAAAGCCAATTGCAACGTTGGATTTTGCTTCTCTATATCCA TCAATAATGATGGCATATAACCTGTGCTACTGCACTCTGGTGACTCCTGAAGATGTTAAAAAACTCAACCTGCCTACAGAGTGTGTCAACAAGACTCCAT CCGGTGAAATATTTGTCAAATCCACTTTGCAAAAGGGAATTCTTCCTGAAATTCTTGAAGAACTTATTGCCGCGCGTAAAAGAGCAAAAGCGGATTTAAA GGAAGCAAAGGATCCATTTGAGAAGGCAGTTTTGGATGGCCGCCAACTGGCTCTTAAGATAAGCGCAAATTCTGTATATGGCTTTACAGGAGCAACAATT GGCCAATTACCATGTCTGGAGATATCCTCAAGTGTGACGAGCTATGGTCGCGAAATGATTGATCACACAAAAAAACTAGTGGAGGAGAAATTCACTATGC TGGGAGGCTATGAGCATAATGCTGAGGTTATATATGGGGACACAGATTCTGTGATGGTACAATTTGGTGTGTCCACAGTAGAAGAAGCAATGAAGCTGGG AAGAGAAGCTGCTGAACATATCAGTGGAACTTTCATCAAACCTATCAAGCTGGAGTTTGAGAAAGTCTATTTTCCATATCTACTGATAAGCAAGAAGAGA TATGCTGGCTTATTCTGGACGAGTCCGGCTAATTATGACAAAATGGATGCTAAAGGAATTGAAACAGTGCGAAGAGACAACTGCCTTTTAGTTAAAAACC TGGTAACAGAGTGTCTGCACAAGATACTAATGGACAGAGATGTTCCTGGTGCTGTTAGATATGTCAAGAATACTATTTCAGATCTTCTCATGAATCGTCT GGATCTGTCACTCCTTGTTATAACTAAGGGCCTGACAAAGACAGGAGATGATTATGAAGTAAAGTCTGCTCATGCTGAGCTTGCAGAACGCATGCGCAAG AGAGATGCTGCCACTGCCCCGAATGTCGGGGACCGAGTCCCTTATGTTATAATCGAATCTGCCAAAGGAGCTAAGGCTTATGAGAAGTCAGAGGATCCCA TATATGTGCTTGAGAATAACATCCCAATAGACAGTAAATACTACCTAACAAACCAGCTACAAAAGCCACTTCTACGGATCTTTGAGCCGATCTTGAAGAA TGCAAAAGAAGAACTACTCAGTGGTGATCATACCCGGAACATATCCAAACCCATTCCTTCCAGTGGTGGCATTATGAAATTTGCCAAGAAACAACTCACT TGCATCGGCTGCAAAGCCTTAATTAAGGAATCGGAACGAACCATTTGCTCACACTGCAAAGGAAGAGAACCGGAGCTGTATTGTAAAACTGTTTCTCAAG TGGCTGATCTAGAGTCGCTTTTCGGGAGATTATGGACACAGTGCCAAGAATGCCAGGGCTCCCTTCATCAAGATGTCCTATGCACCAGTCGAGATTGCCC TATATTCTACCGTAGGAAGAAGGCGCAGAAAGACATGGCCGAAGCTAGGAGGCAGCTTGATCGCTGGAGCTTCTGA
AA sequence Show only first row Show all	>Lus10033513 pacid=23143449 polypeptide=Lus10033513 locus=Lus10033513.g ID=Lus10033513.BGIv1.0 annot-version=v1.0 MLGSDRRAGNARKRPPPAKPPQPSPAAKVQARGPEDDFVDEDVFLDETLIAEDEGNINSEWAQQSLVSHLAKWKRPSLSPDYVSQSKSITFQQLELDYVV GDSRNDLLDNWSGPAPIIRIFGVTTEGHSVCCNVHGFEPYFYISCPSGMGPDDISRFHQVLEARMKEMNRSSKVSKLIRRIELVHKKSIMYYQQQDSNPF LKIVVAFPAMVASCRGILDKGIHIDGLGTKSFMTYESNVVFALRFMVDCGIVGGNWIEVPAGKYKKAIKSLSYCQLEVDCLYSSLISHVPEGEFSKMAPF RILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGENQPFVRNIMTLKSCSPIVGADVMSFDTEREVLLAWRDLIREVDPDIIIGYNICNFDLPYLIERA QSLGISEFPILGRIRNCRVRVRDATFSSRQYGTRESKEVALEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAV YCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLARGQSIKVLSQLLRKSKQKGLLIPNVKQAGSDQGTYEGATVLEPKVGFYEKPIATLDFASLYP SIMMAYNLCYCTLVTPEDVKKLNLPTECVNKTPSGEIFVKSTLQKGILPEILEELIAARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATI GQLPCLEISSSVTSYGREMIDHTKKLVEEKFTMLGGYEHNAEVIYGDTDSVMVQFGVSTVEEAMKLGREAAEHISGTFIKPIKLEFEKVYFPYLLISKKR YAGLFWTSPANYDKMDAKGIETVRRDNCLLVKNLVTECLHKILMDRDVPGAVRYVKNTISDLLMNRLDLSLLVITKGLTKTGDDYEVKSAHAELAERMRK RDAATAPNVGDRVPYVIIESAKGAKAYEKSEDPIYVLENNIPIDSKYYLTNQLQKPLLRIFEPILKNAKEELLSGDHTRNISKPIPSSGGIMKFAKKQLT CIGCKALIKESERTICSHCKGREPELYCKTVSQVADLESLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARRQLDRWSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	0	1
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	2.0	0.9566
AT2G04235			unknown protein		Lus10016054 [exp]	3.0	0.9624
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	4.2	0.9524
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	4.7	0.9438
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	6.3	0.9456
AT1G07970			unknown protein		Lus10023345 [exp]	9.8	0.9340
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	9.9	0.9503
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	10.4	0.9360
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	11.3	0.9371
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	12.3	0.9507

Compare expression of checked genes

Lus10033513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.