Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 210 / 2e-68 RING/U-box superfamily protein (.1) AT1G49220 186 / 1e-58 RING/U-box superfamily protein (.1) AT1G49200 176 / 5e-55 RING/U-box superfamily protein (.1) AT1G49210 172 / 1e-53 RING/U-box superfamily protein (.1) AT3G18773 165 / 8e-51 RING/U-box superfamily protein (.1) AT5G05280 141 / 7e-42 RING/U-box superfamily protein (.1) AT3G10910 134 / 2e-39 RING/U-box superfamily protein (.1) AT1G20823 123 / 1e-34 RING/U-box superfamily protein (.1) AT5G47610 117 / 8e-33 RING/U-box superfamily protein (.1) AT1G76410 114 / 3e-31 ATL8 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020859 [exp] 312 / 4e-108 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10006788 [exp] 231 / 1e-76 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 231 / 2e-76 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005814 [exp] 226 / 1e-74 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006785 [exp] 198 / 1e-63 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10005815 [exp] 187 / 1e-59 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006786 [exp] 176 / 4e-55 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005816 [exp] 172 / 6e-54 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 169 / 3e-52 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 220 / 3e-72 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 214 / 7e-70 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 182 / 1e-57 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 159 / 1e-48 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 149 / 8e-45 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 143 / 1e-42 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 142 / 5e-42 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 125 / 5e-36 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 125 / 1e-35 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 123 / 3e-35 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033515 pacid=23143529 polypeptide=Lus10033515 locus=Lus10033515.g ID=Lus10033515.BGIv1.0 annot-version=v1.0 ATGTCTTCCTCAACTACTAATCAGCTCTTACTTCAACTCACTCCCGCCAGAAGACTCCTCCTCATCGACGACCACCCCTCTCCCCCGCCGTACAACAACA ACGGCGACAACACATTCGACGCCAACGTCGTAATGGTCCTCTCCGTCCTCCTCTGCGCTCTGATCTGCTCTCTGGCTCTCAACTCCATCATCCGCTGCGC ATTGAGATGTTCCAATTTGTCCAATTCTTCCTCCTCCTCCTCCGACCACCACCGCCTGTCCCCAGCGGCCAGATTGGCCAACACTGGGATTAAGAAGAAG GCGCTCAAGACTTTCCCCGTGGTCAGATTTTCTGACGAGTTGAACCTCCCTGGGTTGGATGCAGAGTGCGTCATCTGCCTCTCGGATTTCGCCGCCGGCG AGAAGGTCAAGATTTTGCCGAAGTGTAACCACGGGTTCCATGTCAAGTGTATTGATAAATGGCTTAGGTCCCACTCTTCTTGCCCAACTTGCCGCCACTG CCTGATCGAGACCTGCCAGAAGATCGTGGATTTCGGTGGTGTTAGGCCGGTGACGGCGCCGCCGGCGGTGGAGGTTTTTATTAATTCATCTTCTAATACT CCGGCGACGGAGGCGGTTTCGTCGTCATCTAATGGTTCGGGAGATAATTCTTCAGCTACGCCGGCGGTGGAAGCAGTTGTTATCAGTATGCCGCCGTTGG AATCGGAAGGGCCGGTACGAGATTACCGGGGAACCTGCTAA
AA sequence Show only first row Show all	>Lus10033515 pacid=23143529 polypeptide=Lus10033515 locus=Lus10033515.g ID=Lus10033515.BGIv1.0 annot-version=v1.0 MSSSTTNQLLLQLTPARRLLLIDDHPSPPPYNNNGDNTFDANVVMVLSVLLCALICSLALNSIIRCALRCSNLSNSSSSSSDHHRLSPAARLANTGIKKK ALKTFPVVRFSDELNLPGLDAECVICLSDFAAGEKVKILPKCNHGFHVKCIDKWLRSHSSCPTCRHCLIETCQKIVDFGGVRPVTAPPAVEVFINSSSNT PATEAVSSSSNGSGDNSSATPAVEAVVISMPPLESEGPVRDYRGTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10033515 [exp]	0	1
AT1G72430			SAUR-like auxin-responsive pro...		Lus10013181 [exp]	12.0	0.7828
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042377 [exp]	15.0	0.7386
AT5G51105			Protein of unknown function (D...		Lus10019552 [exp]	16.7	0.8108
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	20.4	0.7822
AT4G29270			HAD superfamily, subfamily III...		Lus10011140 [exp]	23.7	0.7200
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	42.5	0.7300
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10005819 [exp]	44.5	0.7666
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	59.6	0.7292
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	70.8	0.6925
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	77.3	0.7224

Compare expression of checked genes

Lus10033515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.