Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34790 365 / 4e-120 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30760 363 / 4e-119 FAD-binding Berberine family protein (.1) AT5G44440 359 / 9e-118 FAD-binding Berberine family protein (.1) AT4G20820 352 / 4e-115 FAD-binding Berberine family protein (.1) AT5G44410 349 / 6e-114 FAD-binding Berberine family protein (.1) AT5G44400 346 / 1e-112 FAD-binding Berberine family protein (.1) AT1G30700 344 / 4e-112 FAD-binding Berberine family protein (.1) AT5G44390 341 / 1e-110 FAD-binding Berberine family protein (.1) AT1G26420 332 / 2e-107 FAD-binding Berberine family protein (.1) AT1G26380 332 / 2e-107 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012641 [exp] 415 / 3e-139 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 390 / 9e-130 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 386 / 3e-128 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 372 / 4e-123 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 366 / 1e-120 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 363 / 4e-119 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 362 / 6e-119 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 355 / 6e-116 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10008410 [exp] 349 / 2e-114 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 441 / 1e-149 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 437 / 2e-148 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 431 / 1e-145 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 427 / 3e-144 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461700 [exp] 426 / 1e-143 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 425 / 2e-143 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 424 / 6e-143 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 424 / 8e-143 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163000 [exp] 423 / 1e-142 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162916 [exp] 423 / 2e-142 AT4G20820 532 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10033516 pacid=23143472 polypeptide=Lus10033516 locus=Lus10033516.g ID=Lus10033516.BGIv1.0 annot-version=v1.0 ATGATGATATCAACGACGACGACGACTGCATCACTTCTCATTCTTCTCATGCTGCTTTCATTCACCGACGCTGCCACCGACAACAACCAAGTAGCTGATT TCCTCAAATGCATTTACTCAAACTCCTCCTCTCTGGCCACTGCCGCCGAAAACGTCGTCTTCTCCTCCACCGACGACGACACCACCTCCTTCACCAGCGT GCTCCACTCCTCGATCCGGAACAAGAGATTCGAGACAACCGCCACCCCAATGCCCTTGGTCGTCGTCAGGCCAACAGACTTCTCCCACGTGGCACCGGTC GTCGTCTGCGCCAAAACGCACGGCCTCCACCTCAGAGTGAGAAGTGGCGGACACGACTACGAGGGGCTCTCGTACGTGTCCCCTCGTCCGTCGGTCCTCC TCGATCTGCTCGTCCTCTCCGACGTCACCGTCGACGCCGCTCACAAGACGGCCTGGATACAATCCGGAGCCACGGTGGGCCAAGTGTACTTCTCTGTCGA ACTGGCGAGCAGCACCTTGGCGTTTCCTGCTGGACTGTCCCCTACTGTCGGGATAGGTGGCCAGCTCAGCGGCGGCGGAATCGGGACGCTCCTCCGCTAC GCCGGCGTGGCCGCGGACCATGTGACTGACGTGGTCGTTGTGGACTCGGAAGGACGTGTGCGTGACAGAAAATCCCTCGGGGAGGATGTCTTCTGGGCTG TACGAGGCGGCGGAGGAAACACGTTTGGGGTGGTTCTGGCATGGAAGGTTGACCTTGTTCCGGTGCCGGAAATTTTCACCGCCGGCATCGTGTCCACAAA TATGGAACAATTAGGCGAGCCGTGGCTGGTCAAGTGGCAACAAGTCGCTGCCACGTTGCCCGACAAAATGTTCGTCCAAGTCGTCATCTACAAGCCAAGG AACGGGACCATGACGTCATCACTGACCGTGACGGTCAAAATCTTGTACGTCGGACCCGCTCATGAGGCAATTTCGGTGCTGCATGATAGCTCCCCGGAGC TTGGAGTGTTTGGACCGTATCTGGTCGAAATGCCATGGGTGAAAACGGTGCTCTACTTTGCCGATTTTGGAGTCGACGAGTCACCGGAGGTGCTGGTCGG CCGAGTTCCTCTATCTCCGAGGAAGTACTTCAAAGCTAAATCGGATTACGTCACCCAGGCTATCCCGGTGACCGTACTCCAAGGCCTTTGGAAACAAATG TTGCAGGACAAGTACATCGAGGAGGCTTCCCTGATCCTCACGCCATATGGAGGACAAATGGCGAATATTTCGGAGTCGAGCAATCCCTTCCCGCACCGGG GAGGGAATCTATTCGAGATTCAGTACTTGGTTTTGTGGACGGGAGACGGAGAAGAGGAGGGTGATAGACACGTACGGTGGATTAGGGAGCTGTACGCATA CATGCGGAAATACGTATCGAGCAATCCGAGATGTGCCTACGTTAACTACAGAGATCTGGACATCGGGTCGAATAATCTCCACGGTATAACAATTTACAAG CAAAGTAAAGTTTGGGGGGAGAAATACTTCAAGAAGAATTTCGATAAATTGGTGAGGATCAAAACCAGTTTCGATCCGACCAACTTTTTCAACAACGAAC AAAGCGTCCCTTCTCTATCACCTTTGGCGGGTCAGAACCAACATACAAGGAAAAATAGGGCACCTGAAAGGCATCCATCTGCATGCTTTTCAGCTTTGCT CTTATGCTTTCTTCTTCTTTAG
AA sequence Show only first row Show all	>Lus10033516 pacid=23143472 polypeptide=Lus10033516 locus=Lus10033516.g ID=Lus10033516.BGIv1.0 annot-version=v1.0 MMISTTTTTASLLILLMLLSFTDAATDNNQVADFLKCIYSNSSSLATAAENVVFSSTDDDTTSFTSVLHSSIRNKRFETTATPMPLVVVRPTDFSHVAPV VVCAKTHGLHLRVRSGGHDYEGLSYVSPRPSVLLDLLVLSDVTVDAAHKTAWIQSGATVGQVYFSVELASSTLAFPAGLSPTVGIGGQLSGGGIGTLLRY AGVAADHVTDVVVVDSEGRVRDRKSLGEDVFWAVRGGGGNTFGVVLAWKVDLVPVPEIFTAGIVSTNMEQLGEPWLVKWQQVAATLPDKMFVQVVIYKPR NGTMTSSLTVTVKILYVGPAHEAISVLHDSSPELGVFGPYLVEMPWVKTVLYFADFGVDESPEVLVGRVPLSPRKYFKAKSDYVTQAIPVTVLQGLWKQM LQDKYIEEASLILTPYGGQMANISESSNPFPHRGGNLFEIQYLVLWTGDGEEEGDRHVRWIRELYAYMRKYVSSNPRCAYVNYRDLDIGSNNLHGITIYK QSKVWGEKYFKKNFDKLVRIKTSFDPTNFFNNEQSVPSLSPLAGQNQHTRKNRAPERHPSACFSALLLCFLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033516 [exp]	0	1
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007501 [exp]	4.7	0.7857
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	9.0	0.8329
					Lus10033211 [exp]	9.8	0.8326
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010875 [exp]	12.2	0.7080
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	12.4	0.8317
					Lus10036765 [exp]	12.7	0.8329
AT2G16190			unknown protein		Lus10011284 [exp]	15.6	0.8329
AT5G51105			Protein of unknown function (D...		Lus10019549 [exp]	15.7	0.7715
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	18.0	0.8329
					Lus10006395 [exp]	20.1	0.8329

Compare expression of checked genes

Lus10033516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.