Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) AT2G37840 295 / 1e-94 Protein kinase superfamily protein (.1.2) AT3G53930 288 / 4e-92 Protein kinase superfamily protein (.1.2) AT3G61960 284 / 6e-92 Protein kinase superfamily protein (.1.2) AT2G30360 159 / 2e-45 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT3G01090 160 / 4e-45 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 156 / 6e-45 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT4G18700 159 / 8e-45 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G21326 154 / 2e-43 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 153 / 7e-43 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020855 [exp] 504 / 1e-179 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10005135 [exp] 303 / 2e-98 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 301 / 1e-97 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 283 / 3e-90 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 283 / 8e-90 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019411 [exp] 157 / 3e-44 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10042816 [exp] 156 / 6e-44 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10007283 [exp] 155 / 8e-44 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10028115 [exp] 155 / 1e-43 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007200 [exp] 418 / 2e-148 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 418 / 5e-148 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 383 / 7e-135 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.014G107000 [exp] 296 / 1e-95 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 290 / 6e-93 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 290 / 9e-93 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 287 / 2e-91 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G263500 [exp] 158 / 9e-45 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 157 / 1e-44 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.017G087900 [exp] 158 / 2e-44 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033518 pacid=23143481 polypeptide=Lus10033518 locus=Lus10033518.g ID=Lus10033518.BGIv1.0 annot-version=v1.0 ATGGGCGACGAGGCGGCGGCAACGGAGGTCGTCGGAAACTATATTCTGAAATCGAAGCTGGGAGAGAGTTCTTCGTCAACGGTATGGAAGGCGGAGAAGA AGGTATCGGGGGAAACGGTGGCAGTGAAGCAAGTTCGACTTTCGAAGCTCAACAAGCATCTCAAAGACTGTCTGGATTGCGAGCTCAGCTTCTTGCCCTC CGTCAACCATCCCAATATTATTCGCCTCTTCAATTTCTTCCAGGTTGATGGTTCTATGTTCCTGGTACTGGAATTCTGCGATGGAGGAGATTTAGCTGCT TATGTTAAAGACCACGGAAAGGTTCAAGAGAAGACTGCTCGAAAGTTCATGCAACAGCTAGGGGCTGGTTTAGAAGTGCTAAACAGCCACCATGTCGTTC ACAGAGACTTGAAACCCGAGAATATCCTACTGAGTGGGCAAGGGAACGATCCGGTTCTCAAGATCGCTGACTTTGGGTTATCAAGAAGAATGAATCCTGT AAAGCACGCAGAGACAGTCTGTGGATCTCCATTGTATATGGCTCCAGAAGTTCTACAATTCCAGCGATATAGTTCTAAGGTCGATATGTGGAGCATCGGC GCAATTCTTTTCGAGCTCCTCAATGGTTACCCACCTTTCCGCGGCAGAACTAATGTCCAGTTGCTGCAGAATATCAAGTCATCTGCGGAACTACCTTTTT CTCGACTAATACTTCCAGAGCTGCATCCTGACTGCATTGACATATGTTCGAAACTGCTCTCTCAGAACCCAGAGCACAGGTTGTCATTTGAAGAATTTTA TCGTCATCGATTCTTGCGGGGCAAGGAGATCGATTTGACGAGTCCAACCTGCAATGTTACCTGCAGTATAGGAGAAAGAGAGATTGTGAGAGCCTTTCCT GGAGAAGATACTGTTCTCTTGTAG
AA sequence Show only first row Show all	>Lus10033518 pacid=23143481 polypeptide=Lus10033518 locus=Lus10033518.g ID=Lus10033518.BGIv1.0 annot-version=v1.0 MGDEAAATEVVGNYILKSKLGESSSSTVWKAEKKVSGETVAVKQVRLSKLNKHLKDCLDCELSFLPSVNHPNIIRLFNFFQVDGSMFLVLEFCDGGDLAA YVKDHGKVQEKTARKFMQQLGAGLEVLNSHHVVHRDLKPENILLSGQGNDPVLKIADFGLSRRMNPVKHAETVCGSPLYMAPEVLQFQRYSSKVDMWSIG AILFELLNGYPPFRGRTNVQLLQNIKSSAELPFSRLILPELHPDCIDICSKLLSQNPEHRLSFEEFYRHRFLRGKEIDLTSPTCNVTCSIGEREIVRAFP GEDTVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	0	1
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	1.0	0.9390
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	3.5	0.9268
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10042725 [exp]	3.9	0.9102
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10042459 [exp]	5.3	0.8898
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	7.9	0.9066
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	8.2	0.8981
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	8.8	0.9089
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	10.2	0.8989
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	12.0	0.8998
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	12.4	0.9034

Compare expression of checked genes

Lus10033518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.