Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 63 / 2e-11 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 57 / 2e-09 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G14840 57 / 2e-09 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G24240 56 / 4e-09 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G20480 56 / 6e-09 EFR EF-TU receptor (.1) AT3G47570 55 / 1e-08 Leucine-rich repeat protein kinase family protein (.1) AT5G65240 54 / 1e-08 Leucine-rich repeat protein kinase family protein (.1.2) AT1G73080 54 / 1e-08 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT4G36180 54 / 2e-08 Leucine-rich receptor-like protein kinase family protein (.1) AT3G11080 53 / 4e-08 AtRLP35 receptor like protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 126 / 2e-33 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 126 / 3e-33 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 119 / 6e-31 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 112 / 1e-28 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 108 / 2e-27 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 108 / 4e-27 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 106 / 2e-26 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 105 / 3e-26 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 105 / 4e-26 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 82 / 6e-18 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 79 / 4e-17 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 75 / 2e-15 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 72 / 2e-14 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 71 / 2e-14 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 68 / 3e-13 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 68 / 4e-13 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 67 / 7e-13 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 67 / 8e-13 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 66 / 1e-12 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033519 pacid=23143420 polypeptide=Lus10033519 locus=Lus10033519.g ID=Lus10033519.BGIv1.0 annot-version=v1.0 ATGATTCTATCCATTTCTGCGAGTGGTCTGGTGTGTCTTGTTTCGAAATACATTATGGCAGAGTCACAACCTTACGATTGTCATCTCAAAGACTCACCGG CTCTATCTCAACGCACGCAATCTCAGCTTCTTGAAAGTTCTCCGCCTCTCCAACAACAACTTTTTAGGGGAATACCTCCAAAAATCGGCCGCATTGGCAG ATTGCAACAGTTGGTGCTTTCCAATAACTCGCTTGATAGTGCAAACAATCTTCACGGAAGCATCTCTTACGCTTTTGGCAACTTGTCATCTCTTCAGGGA TTTATCGGAGCTGAAAACCACTTGAGTGGGAGAATTACAGCTACCTTAGGCCGATTGAAGAACATTCAATTATTGAATTTTCAAACTAATAACTTATTTG ATGAAATCCCCTCTTCCATCTTCAATCTTTCTTCTCTCACAGCAATGTGGTTTGGATTTAACCAACTTCCCGACATGCTTCCTTGGAATCTTGGATTATT ACTTCCAAACCTTGAGGATTTTGAGGTGACCGGCAACCAGTTCACCGATAGTGTTCCGCCTTCCTTATCCAATGCCTCCAATTTGGTTCAACTACAATTT CACGGGGATGCTAACTAG
AA sequence Show only first row Show all	>Lus10033519 pacid=23143420 polypeptide=Lus10033519 locus=Lus10033519.g ID=Lus10033519.BGIv1.0 annot-version=v1.0 MILSISASGLVCLVSKYIMAESQPYDCHLKDSPALSQRTQSQLLESSPPLQQQLFRGIPPKIGRIGRLQQLVLSNNSLDSANNLHGSISYAFGNLSSLQG FIGAENHLSGRITATLGRLKNIQLLNFQTNNLFDEIPSSIFNLSSLTAMWFGFNQLPDMLPWNLGLLLPNLEDFEVTGNQFTDSVPPSLSNASNLVQLQF HGDAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	0	1
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	2.2	0.8252
					Lus10022574 [exp]	3.5	0.8064
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10036231 [exp]	4.9	0.7666
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10013322 [exp]	10.2	0.7805
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	16.0	0.7546
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	16.1	0.7891
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	18.3	0.7491
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	19.3	0.7404
AT3G47570			Leucine-rich repeat protein ki...		Lus10035726 [exp]	19.5	0.7540
					Lus10015577 [exp]	28.1	0.6972

Compare expression of checked genes

Lus10033519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.