Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56840 479 / 1e-167 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020854 [exp] 382 / 3e-133 AT3G56840 277 / 2e-91 FAD-dependent oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026100 [exp] 569 / 0 AT3G56840 534 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10033520 pacid=23143463 polypeptide=Lus10033520 locus=Lus10033520.g ID=Lus10033520.BGIv1.0 annot-version=v1.0 ATGATGACGAAGTTGCTGAAGAAAATTTACAGCTCTTCTACTTTCTCCACGAAAGCTGCCAATTCTCCCATGGAGAAGGTTGATTGCGTGGTGATCGGAG CAGGCGTAATAGGGATAGCAGTAGCTAGAGCGCTCGCTCTGAAGGGAAGAAGAGAAGTTCTGGTCGTCGATTCAGCTCCGACCTTCGGCGCCTCCACGAG CTCAAGGAACAGCCAAGTCATTCACGCCGGGATTTACTACCCTCGGAACTCGCTCAAGGCAGCCTTCTGCGTACAAGGGAGGAGATTGCTGTACGATTAC TGCTCGGAGCGCAGGATTCCTCACGAACGGATAGGTAAGCTGGTAGTAGCCACCGGGGAGTCTGGCGTTTTGAAGCTGTCCGATCTGATGAATCGCGGCG TTGAAAACGGGGTCGAAGGATTGAAGATGCTGGATGGGAAAGAAGCCATGGGAATGGAGCCTGAATTGCGTTGCGTCAAGGCTTTGTTCTCTCCTGGTTC TGGGATCGTTGATTGTCACTCTCTGATGCTTTCTTTACTGGGAGATGCTGAAAACCACGGAACAACATTCTGTTACAACTCTACTGTGATTGGGGGGAAT ATTGAAGGGGATTCATTGAACTTACAACTGATTGGGAGCAAAGAACTTGAGAACTGGGATGGTAATTCGAAGCTGGATCCAGAGTTTGTGCTTGCTCCTA AGCTTGTGGTGAATTCTGCTGGATTGAGTGCAGTACCCCTTGCAAGGAGATTTGACGGCCTAAGTGGCAAAGTGATTCCTCCTGCACATTTTGCTCGCGG GCTGTACTTCACCCTGTCGAATACTAGGGAACCTCCTTTCAAGCATTTGATATACCCTACACCAGAGGATGGTGGTTTAGGTGTGCATGTTACTCTTGAT TTGGATGGTCAGGTTAAGTTTGGCCCGAATGTTGAATGGATCCAAGCGATAGATGATGTTTCGAGCTTTCTAGATAAGTACGATTACTCTGTAGATGGCA GTCAAGCAGAGAGATTCTATCCCGAGATAAGGAAGTACTATCCGAATCTGAAGGATGGATCATTAGAGCCAGCTTATTCAGGGATTCGACCGAAAGTAAC TGGCCCTGGCGAGTCTGCTGGCGACTTCGTAATACAGGGAGAGGATAGCCATGGAGTGCCCGGACTTGTGAACCTCTTTGGAATAGAGTCTCCTGGCCTG ACTTCAAGCATGGCCATCGCTGAATACGTCGCTAACAGATATTTGAAGTGA
AA sequence Show only first row Show all	>Lus10033520 pacid=23143463 polypeptide=Lus10033520 locus=Lus10033520.g ID=Lus10033520.BGIv1.0 annot-version=v1.0 MMTKLLKKIYSSSTFSTKAANSPMEKVDCVVIGAGVIGIAVARALALKGRREVLVVDSAPTFGASTSSRNSQVIHAGIYYPRNSLKAAFCVQGRRLLYDY CSERRIPHERIGKLVVATGESGVLKLSDLMNRGVENGVEGLKMLDGKEAMGMEPELRCVKALFSPGSGIVDCHSLMLSLLGDAENHGTTFCYNSTVIGGN IEGDSLNLQLIGSKELENWDGNSKLDPEFVLAPKLVVNSAGLSAVPLARRFDGLSGKVIPPAHFARGLYFTLSNTREPPFKHLIYPTPEDGGLGVHVTLD LDGQVKFGPNVEWIQAIDDVSSFLDKYDYSVDGSQAERFYPEIRKYYPNLKDGSLEPAYSGIRPKVTGPGESAGDFVIQGEDSHGVPGLVNLFGIESPGL TSSMAIAEYVANRYLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56840			FAD-dependent oxidoreductase f...		Lus10033520 [exp]	0	1
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10035503 [exp]	6.3	0.7955
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	11.4	0.7813
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	17.0	0.8068
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	29.5	0.7701
AT1G12650			unknown protein		Lus10017837 [exp]	34.8	0.7734
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10022404 [exp]	48.4	0.7069
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	69.7	0.7634
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	71.4	0.7653
AT5G17620			unknown protein		Lus10013643 [exp]	76.7	0.7521
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	78.1	0.7433

Compare expression of checked genes

Lus10033520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.