Gene [FLAX] | FIBexDB

Lus10033521 [FLAX]

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT1G49170	146 / 2e-46			Protein of unknown function (DUF167) (.1)
AT5G63440	46 / 9e-07			Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10020853 [exp]	131 / 2e-40	AT1G49170	107 / 2e-31	Protein of unknown function (DUF167) (.1)
Lus10042819 [exp]	84 / 1e-21	AT1G49170	54 / 4e-10	Protein of unknown function (DUF167) (.1)
Lus10016760 [exp]	47 / 9e-07	AT5G63440	439 / 8e-159	Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3)
Lus10022455 [exp]	47 / 1e-06	AT5G63440	439 / 9e-159	Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.005G056500 [exp]	160 / 9e-52	AT1G49170	172 / 1e-56	Protein of unknown function (DUF167) (.1)
Potri.015G094300 [exp]	44 / 6e-06	AT5G63440	429 / 5e-155	Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3)
Potri.012G096500 [exp]	43 / 1e-05	AT5G63440	442 / 5e-160	Protein of unknown function (DUF167) (.1), Protein of unknown function (DUF167) (.2), Protein of unknown function (DUF167) (.3)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF02594 [flax] [poplar]	DUF167	Uncharacterised ACR, YggU family COG1872

Representative CDS sequence

Show only first row Show all

>Lus10033521 pacid=23143383 polypeptide=Lus10033521 locus=Lus10033521.g ID=Lus10033521.BGIv1.0 annot-version=v1.0

ATGGCTCCGTCGAGCAAGAAAGGTAAAGGAAAGGCAAATTCAGCTCCGTTACAAAAATCAGAAACGAAACCTTCTTCCGATTTCCCGTCTTTTATTCGAT

CGGTACCTCCGTCGTCAGTGGCCATCACCATCCACGCGAAGCCCGGCGCTAAATCGGCATCCATTACAGATTTCAGTGACGAGGCTTTAGGAGTGCAGAT

CGACGCCCCTGCCAAGGACGGTGAAGCCAACGCAGCTCTCCATGTTCATGAGTCCCCTTTCGAACAGGTATTAGGGGTGAAAAGAAGGCAGGTGTCGCTC

GGGGCAGGCTCGAAATCAAGAGACAAGGTGGTTATAGTGGAGGAATTAACCCTACAAGATGTCTTCAGTGCTTTAAAGAAGTCTCAGATGTGA

AA sequence

Show only first row Show all

>Lus10033521 pacid=23143383 polypeptide=Lus10033521 locus=Lus10033521.g ID=Lus10033521.BGIv1.0 annot-version=v1.0

MAPSSKKGKGKANSAPLQKSETKPSSDFPSFIRSVPPSSVAITIHAKPGAKSASITDFSDEALGVQIDAPAKDGEANAALHVHESPFEQVLGVKRRQVSL

GAGSKSRDKVVIVEELTLQDVFSALKKSQM

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49170			Protein of unknown function (D...		Lus10033521 [exp]	0	1
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10013363 [exp]	16.7	0.7836

Lus10033521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.