Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79540 662 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G40890 585 / 0 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT1G74550 317 / 3e-97 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT1G74540 313 / 1e-95 CYP98A8 cytochrome P450, family 98, subfamily A, polypeptide 8 (.1) AT3G53700 251 / 1e-70 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 242 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 240 / 8e-67 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G66540 218 / 1e-62 Cytochrome P450 superfamily protein (.1.2) AT5G07990 222 / 2e-62 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 221 / 2e-62 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020852 [exp] 1447 / 0 AT1G79540 665 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020847 [exp] 665 / 0 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 662 / 0 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020850 [exp] 478 / 3e-159 AT2G40890 666 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10013150 [exp] 254 / 5e-74 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 254 / 1e-73 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10039056 [exp] 248 / 4e-69 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 240 / 8e-67 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 240 / 1e-66 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049400 [exp] 780 / 0 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G033300 [exp] 605 / 0 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 561 / 0 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 542 / 0 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.001G167900 [exp] 248 / 7e-72 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.002G171800 [exp] 248 / 8e-72 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.018G051300 [exp] 245 / 1e-70 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 245 / 2e-70 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 244 / 5e-70 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 242 / 9e-70 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450 CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033522 pacid=23143427 polypeptide=Lus10033522 locus=Lus10033522.g ID=Lus10033522.BGIv1.0 annot-version=v1.0 ATGCAACTCCAGTTCCTGCTTCACTGGATCTCGCATCGGAAGCTTCCATGGATCAACTACTTCCACGCAGCTCCCTTGTTATCGGAAAGCCTTGTATCAA ATGAAATCGTATCGATTATCGAGACTGTCAATCCGATGGAGCAGGAGCTGGACGCCATGGTTCCTTTCCTCTCCCCTGCTGACGTAACTTCCGTCATTCA AGACCCGCCCACTCCGCAATTAGGTTTCCGATTCTTCATCTGGGCGTCCAGATACAAGCGTTTCCGGACGTGGGAATCTCGGGACGCCATACTCCGGATG CTGGGCGAAGAGAAAGGTATCGAATTGTACAATCAGGTTTTGGAAGAAATGAAGAGCTGGAAACTCGAGGTTCCAGCTGAGGCGTTCTCGGTGTTGATTC AAGCTTATGAGAAGAAAGGCATGGCTGAGAAGGCTGTCGAAGCTTTTGGGGTGATGCGAGATTTCGACTGTAAGCCCGATGTTCTTACTTACAATGCATT TCTGAAGACTCTGTTGCGGAAAGGGGTTTCTTTACTTGCTGTAGCTGTTTACCACCAAATGTGGAACTTGAATTGCATTCCCAATAGGACTACTTTCACC ATCTTGATTGGTGGATTGTTCCAGTGTGGGGAGAGGAAAAGCGCACTCCAGGTGTTCGATATAATGGGTAAGAGGGGGATTCTGCCTGATAAGATCGTAT ACACCATGGTCATTTCGGCTTGGTGCCAGGCTCAGAGGGTTGATGTTGCACATAGGTTGCTTGATGAGATGAAAAGTAAAGGCTGTGAACCCGATTCCGC TACTTATAACGCGTTGCTTACTGGATATTGTAAGTTAGGTAGAGTACATGAAGCTCTCACTTGCTTGAGTTCCTTTCGTAAAGAAGGTTATGTACTCGAC GCTCGTGGCTATAGTTGTTTGATTGACGGGCTTATTAGGGCTAAAAGATACGAAGAAGCAGATACGTGGCATCGTGAAATGATCAAGAATCACAATACTC CCGATGTTGTTTTGTACACTATATGGATTAAAGGCTTGTTGGATGCAGGAAAGGCGAGTGAGGCTTTAAAGTTGTTGAATGAGATGTTGAAGAGTGCTCC GGTTCCTGATATTCAATGTTATAATGTTGTGATCAAAGGGCTCTGTGATATTGGGCTTCTTAATGTAGCAAAGGCGCTCTCTTTGAAGATCTCGAAGCAT GGCTATTTACCTTCTGCATATACACACACCATTCTTATTAGTAGGATGAGCAAGAATGGGATGACTGTAGAGGCTCAACGACTGTTTGACTATATGGGTA AAGTTGGATGCCATCCTTCTGTGGCTAGTTTTAACGCACTTATTGATGGTCTGTGTCGATCAGGGAAGCTTTATGAAGCATTACGCAGAAAGGAGATGAG GAATGATTTTTTGTCTATGCGACTCTCGGGTCTTGGTCGTAATAGCATGAAGGAAATACAGGAAAATTATGAACCTGGTTTGATTCTGAAGGTATACAAC ACCCTTCTGCAACTTGACAAGAAGGTTGTACCAGACATTAGGACATACAACATTTTGATAAACTACTGCTGCAAAGCAGGGAACATTGATGAAGCTTATA GGCTCTTCGAGGAGGTGCCGCTTAGTGGTCTATCACCAGATTCTGTAACATATGGAACACTAATAAATGGGCTTCTACGGCTGGGAAGAGAAAAGGAAGC TGATCAAATGGTTAAGCAAATGTCGAGTAGTGGTTGTTTACCAAGTACAGCAGTTTATAAATCACTTATGACTTGGTCATGCAGAGGAAAGAATGTGACT TCAGCTTTTAGTCTTTGGTTAAAGTATCTGAGGAGTGTTGCTGCCAGGAAGACTGATGCAATTGAAAAGATAGAAGAGCTCTTTGGGAATGGAGAAACTG TAGTGGCAATTCAAAGCTTACTTGAGATGGACCTCAGGCTGAATGATTTTCAGTTAGCCCCATATACGATCTGGTTAATTGGGCTGTGTCAGTCCGGAAG AATAGAAGAAGCGTCTACCGTATTCTCTGTTCTTGATAAGTGCAACGTTGTTATCACTCCACCAAGTTGTGTAAGCTTAATAGAAGGTCTTTGCAGACAA GGGAAACTAGACCTTGCAGTTGGTGTTTTTAATTACACAATTGAAAAGGGCTTTTTGTTGAAGCCTCGAATTTGCAACCAGCTACTTAAGTCCCTTCTTC GCTCGAAAGATCTTTTCGGATTTGCAGAGAAGAGTGTGCAAGTGAAGAGGTACCTGGGAGCTGTAGCGTTCAACAACATCACACGGCTAGCATTCGGGAA GCGGTTTGTGAACTCGGAGGGTGTGATGGATGAACAAGGACTAGAGTTCAAGGCTGTAGTGTCGAATGGGATTAAGATTGGAGCATCACTTTCCATGGCA GAGCATATCGAATGGCTCCGCTGGATGTTCCCACTAGAAGAAGGTACGTTCGTCCAGCACAACGCTCGTCGAGACCGCCTTACCCAAGCCATCATGGAGG AACACACTGCTGCTCGCAACAAGAGTGGCGATACGAAGCAGCATTTCGTCGATGCGTTGCTTACATTGAAGGAGAAGTACGACCTCAGCCAGGACACTAT CATCGGCCTTCTTTGGGACATGATCACGGCTGGCACAGACACGACTGCAATTTCAGCTGAATGGGCTATGGCCGAGATTCTCAAGCACCCAAGGGTTCAA CAGAAGCTCCACGACGAGATGGACCGTGTTATAGGCTTCGAACGAGTCATGACAGAGTCCGATTTCTCCAGCCTAAGTTACCTCCATTGCGTGGTCAAGG AGGCACTCAGGCTGCACCCACCAACCCCGCTAATGCTCCCTCACCGGTCCAACGCCAACATGAAGATCGGCGGTTATGACATACCGAAAGGATCAAATGT CCACGTGAAAGTATGGGAAGTGGCACGCAATCCAGCCGTGTGGAAGGAGACATTGGAGTTCAAACCCGAGAGGTTCCTAGAGGAGGATGTGGACATGAAG GGACACGATTACCGGCTGCTCCCATTCGGGGCAGGGAAGCGGGCTTGCCTCGGGGCACAGCTAGCGATCAACATGGTAACGTCTATGTTGGGACACTTGT TGCACCATTTCCAATGGAGTCCACCGGAAGGTGTGAAGCTGGAGGAGATCGACATGTCGGAGAACCTGGGGCTGGTGACTTACATGCGGACGCCATTGCT GGCCGTGGATACTCCTCGGCTACCGTCTCACTTGTACAAACGTGTAGCCGTCGACATGTAA
AA sequence Show only first row Show all	>Lus10033522 pacid=23143427 polypeptide=Lus10033522 locus=Lus10033522.g ID=Lus10033522.BGIv1.0 annot-version=v1.0 MQLQFLLHWISHRKLPWINYFHAAPLLSESLVSNEIVSIIETVNPMEQELDAMVPFLSPADVTSVIQDPPTPQLGFRFFIWASRYKRFRTWESRDAILRM LGEEKGIELYNQVLEEMKSWKLEVPAEAFSVLIQAYEKKGMAEKAVEAFGVMRDFDCKPDVLTYNAFLKTLLRKGVSLLAVAVYHQMWNLNCIPNRTTFT ILIGGLFQCGERKSALQVFDIMGKRGILPDKIVYTMVISAWCQAQRVDVAHRLLDEMKSKGCEPDSATYNALLTGYCKLGRVHEALTCLSSFRKEGYVLD ARGYSCLIDGLIRAKRYEEADTWHREMIKNHNTPDVVLYTIWIKGLLDAGKASEALKLLNEMLKSAPVPDIQCYNVVIKGLCDIGLLNVAKALSLKISKH GYLPSAYTHTILISRMSKNGMTVEAQRLFDYMGKVGCHPSVASFNALIDGLCRSGKLYEALRRKEMRNDFLSMRLSGLGRNSMKEIQENYEPGLILKVYN TLLQLDKKVVPDIRTYNILINYCCKAGNIDEAYRLFEEVPLSGLSPDSVTYGTLINGLLRLGREKEADQMVKQMSSSGCLPSTAVYKSLMTWSCRGKNVT SAFSLWLKYLRSVAARKTDAIEKIEELFGNGETVVAIQSLLEMDLRLNDFQLAPYTIWLIGLCQSGRIEEASTVFSVLDKCNVVITPPSCVSLIEGLCRQ GKLDLAVGVFNYTIEKGFLLKPRICNQLLKSLLRSKDLFGFAEKSVQVKRYLGAVAFNNITRLAFGKRFVNSEGVMDEQGLEFKAVVSNGIKIGASLSMA EHIEWLRWMFPLEEGTFVQHNARRDRLTQAIMEEHTAARNKSGDTKQHFVDALLTLKEKYDLSQDTIIGLLWDMITAGTDTTAISAEWAMAEILKHPRVQ QKLHDEMDRVIGFERVMTESDFSSLSYLHCVVKEALRLHPPTPLMLPHRSNANMKIGGYDIPKGSNVHVKVWEVARNPAVWKETLEFKPERFLEEDVDMK GHDYRLLPFGAGKRACLGAQLAINMVTSMLGHLLHHFQWSPPEGVKLEEIDMSENLGLVTYMRTPLLAVDTPRLPSHLYKRVAVDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10033522 [exp]	0	1
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	55.6	0.6909
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	102.4	0.6581
AT1G51690		ATB ALPHA, ATBA...	protein phosphatase 2A 55 kDa ...		Lus10007401 [exp]	138.7	0.6375
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	155.2	0.6200
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	234.4	0.5942

Compare expression of checked genes

Lus10033522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.