Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48870 349 / 9e-113 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 328 / 8e-104 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 320 / 6e-101 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 312 / 5e-98 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 301 / 2e-93 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 294 / 2e-89 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 280 / 7e-84 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 273 / 4e-81 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 267 / 7e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 86 / 3e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020846 [exp] 866 / 0 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017312 [exp] 310 / 6e-97 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 300 / 2e-93 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 299 / 3e-92 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 292 / 3e-89 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003974 [exp] 284 / 2e-84 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 281 / 2e-83 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022377 [exp] 249 / 8e-74 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039934 [exp] 223 / 5e-64 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110500 [exp] 489 / 2e-166 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 473 / 4e-160 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 346 / 2e-110 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 338 / 4e-107 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G018200 [exp] 327 / 7e-103 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 323 / 2e-101 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 323 / 3e-101 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 304 / 3e-92 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 285 / 6e-85 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 282 / 3e-84 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10033525 pacid=23143469 polypeptide=Lus10033525 locus=Lus10033525.g ID=Lus10033525.BGIv1.0 annot-version=v1.0 ATGTATGAGATTTGGGTGAATGAGCCTCAGAGTGTTGAGGAGAGACGCCAGAAGTTCTTGTCCCAAATGGGTATTTCTGAGGAGGTTGATGATCATGGCC ATTGTTTGTTGCAGAGGATTTCTGATCAGTGCAGTGAGGAGGCTGAAATGTCAAGCGGTGGATTTGAGGAAAGTCAAAGTCTTTGTTCAGAGAGAGATCA GAGTGTGTCTGAAGCTAATTCCATGGCTAACGATGATGATGATGACGATACAGAAGAAGTAGAAGAAGAAGAGGAGTTTGAATGTCGGAAATTGGGGGAA GAGGCTTCGACATCGGTGGAGAAAGCGAAGATGAAGAGTTGGTGGAGCTGGAAGAAGTTTCTGAGGAGTAGTAGTGAAGTGTCTTCTCCTTCTTCAAAGG TTAAAACTCTAGCAAAAGTGAAGTGTAACAAGAAGAGGTATATGGAGCTTACAGGGTTGCTTGTAGGGCAAGAAATCCAAGCTCACAAGGGTATCATTTG GACTATGAAGTTCAGCCCTGACGGGACGTATTTAGCTACTGGTGGTGAAGATGGAATCGTTCGAGTTTGGAGGGTTCAAACAACATCAGCGGAAGATAAT CATTCTGCTATGTCCTTCTTCACGGATCGAGATTCGAAGAAGGGCAGTTTTCGTCCTTCCATTGTTGTTCCGGAGAGGGTTTTCTTGATCGAGGAGTCGC CTGTCCACGAATTCCGTGGCCATTCCAGTGATGTTCTTGATTTCGCTTGGTCAAGTTCAAACATGCTTTTGTCTTCTTCAAAGGATAAAACTGTTCGGTT GTGGCGAGTTGGTTGCAATGACTGCATCAATGTGTTTCGCCATGGAAACTATGTAGCATGCATCCAGTTCAATCCTGTGAATGAGAACTCCTTCATCAGT GGATCAATCGATGGAAAAGTTCGAATCTGGGGAGTCTACGAGGCACGAGTCATCGACTGGACAGATGTTCGAGACGTCATATCTGCTATATGTTACAGGC CAGATGGGAAGGAGTTTGTAGTTGGTACGATTCGAGGGACATGCCGTTTCTATGATGTATCAGGCCAAGATATGCAACTGGAAGTAGAGATTCATATACA AGGTAGAAAGAGAACATCATGCAACAGAATCACAGGCATTCAGTTTTCTCAGGAAAAAGCTCCAAAAGTTATGATCACATCTGAAGACTCCAAAGTCAGA ATCTTTGATGGGTTTGATCTTGTCCACAAATTTAAAGGACTAGCAAGATCAGGGAGTCGGATGTCGGCTAACTTCACATCAACAGGGAAACACATCGTCT CGGTTGGAGAAGACTCTCAAGTTTATGTCTGGAACTACCACGGCCACCACCACACTAGCAACACCTTGTTAAGCCCTTCGTCGATCAAGCACGTAAAATC CGAGCAGTCTTTCGAGCATTTCTCCTCGCCAGGTGTCTCGGTCGCCACACCATGGCCAGGAACCACCAGATGTAGCAGGAGCTGCAGCAGGAGGAGAAAC AGTACAAGTAGGAGTAGTAGTGTTCATGGTCAGCATGATCAAAGGCTAACAAGAGATGTTGTGGAGAGGTTTTCATTGGGGAATTGGTGTCAGTTCATGG ATGGTGGTGGGTTCAGGGGGAACTTGGTGGCGACCTGGCCGGAGGAGAAGCTTCCTGCGGCGGCGGAGGAGGAAGAATGTGGTGGTGGTGAGGCATGGGG GTTGGTAATTGTGACGGCTAGTTATGATGGGAAGATAACTACTTTTAACAACTATGGGAAGCCAATGCTGCTATAA
AA sequence Show only first row Show all	>Lus10033525 pacid=23143469 polypeptide=Lus10033525 locus=Lus10033525.g ID=Lus10033525.BGIv1.0 annot-version=v1.0 MYEIWVNEPQSVEERRQKFLSQMGISEEVDDHGHCLLQRISDQCSEEAEMSSGGFEESQSLCSERDQSVSEANSMANDDDDDDTEEVEEEEEFECRKLGE EASTSVEKAKMKSWWSWKKFLRSSSEVSSPSSKVKTLAKVKCNKKRYMELTGLLVGQEIQAHKGIIWTMKFSPDGTYLATGGEDGIVRVWRVQTTSAEDN HSAMSFFTDRDSKKGSFRPSIVVPERVFLIEESPVHEFRGHSSDVLDFAWSSSNMLLSSSKDKTVRLWRVGCNDCINVFRHGNYVACIQFNPVNENSFIS GSIDGKVRIWGVYEARVIDWTDVRDVISAICYRPDGKEFVVGTIRGTCRFYDVSGQDMQLEVEIHIQGRKRTSCNRITGIQFSQEKAPKVMITSEDSKVR IFDGFDLVHKFKGLARSGSRMSANFTSTGKHIVSVGEDSQVYVWNYHGHHHTSNTLLSPSSIKHVKSEQSFEHFSSPGVSVATPWPGTTRCSRSCSRRRN STSRSSSVHGQHDQRLTRDVVERFSLGNWCQFMDGGGFRGNLVATWPEEKLPAAAEEEECGGGEAWGLVIVTASYDGKITTFNNYGKPMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	4.1	0.8202
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10036085 [exp]	7.3	0.7876
AT5G47380			Protein of unknown function, D...		Lus10007795 [exp]	8.7	0.7812
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10041595 [exp]	9.5	0.7718
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	13.7	0.7447
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	16.0	0.7804
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	18.2	0.7677
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	19.3	0.6968
					Lus10008493 [exp]	20.8	0.7012
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10035111 [exp]	28.3	0.7449

Compare expression of checked genes

Lus10033525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.