Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21790 1442 / 0 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020845 [exp] 1599 / 0 AT2G21790 1503 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Lus10018867 [exp] 1306 / 0 AT2G21790 1358 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076700 [exp] 1494 / 0 AT2G21790 1448 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.005G087300 [exp] 1487 / 0 AT2G21790 1450 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.005G194900 [exp] 1384 / 0 AT2G21790 1421 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0339 [flax] [poplar] PFL-like PF02867 [flax] [poplar] Ribonuc_red_lgC Ribonucleotide reductase, barrel domain CL0339 [flax] [poplar] PF03477 [flax] [poplar] ATP-cone ATP cone domain CL0339 [flax] [poplar] PF00317 [flax] [poplar] Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
Representative CDS sequence Show only first row Show all	>Lus10033526 pacid=23143479 polypeptide=Lus10033526 locus=Lus10033526.g ID=Lus10033526.BGIv1.0 annot-version=v1.0 ATGTATGTAGTGAAGAGAGATGGGAGACAGGAAACTGTCCACTTTGACAAGATCACTGCCAGGCTCAAGAAGCTAAGCTATGGCCTCAGCATCGACCACT GCGACCCTGTCCTCGTCGCCCAAAAGGTATGTGCCGGAGTCTACAAGGGTGTCACCACCAGCCAGCTTGATGAATTGGCTGCCGAGACTGCTGCTGCCAT GACTGCTAACCATCCTGATTATGCCTCCTTGGCTGCGAGGATTGCTGTGTCGAATCTGCATAAGAACACGATGAAGTCCTTCTCGGAGACTATCAAAGTT ATGTACACTCATTTCAACGAGAGATCTGGATTGAAGGCTCCTTTGATTGCCGATGATGTGTATGATATAATCATGAAGAATGCAGCACGGCTGGACAGTG AGATCATCTATGACCGGGACTTTGATTATGATTATTTTGGATTTAAGACCCTAGAGAGGTCATACCTGTTGAAGGTCCAGGGAAAGGTTGTAGAAAGGCC TCAACACATGCTAATGAGGGTTTCTGTCGGGATCCACAAGGATGACATTGATTCAGCTATTAAAACATACCACTTCATGTCACAACGATGGTTTACTCAT GCTTCTCCCACCCTTTTTAATGCTGGAACACCAAGACCGCAATTGAGCAGTTGTTTCTTGGTATGCATGAAGGATGATAGCATTGAAGGAATATATGAGA CGCTAAAGGAGTGTGCTGTTATCAGCAAATCTGCTGGAGGGATTGGTGTGTCTGTTCATAATATCCGTGCCACTGGAAGTTATATCCGTGGAACTAATGG GGCATCTAATGGCATTGTTCCCATGTTAAGGGTGTTTAATGATACTGCTCGATATGTTGATCAAGGAGGGGGCAAGAGGAAAGGTGCTTTTGCTGTGTAC CTGGAGCCATGGCATGCAGATATATTTGAGTTCCTTGATCTCAGGAAAAACCATGGATCGGAAGAACATCGGGCAAGGGACCTGTTCTATGCCCTTTGGG TGCCAGATCTTTTCATGGAAAGAGTCCAGAGTAATGGAACATGGTCTTTGTTTTGTCCTAATGAGGCACCGGGCTTGGCTGATTGTTGGGGCAAAGAGTT TGAGGAGTTGTACACTAAATATGAAAGAGATGGAAAAGCCAAGAAGGTTGTACAGGCGCAAAGTTTGTGGTTTGAAATATTGACTTCTCAGATAGAAACC GGAACCCCTTACATGCTTTTTAAGGACACTTGCAACCGGAAAAGCAACCAGCAGAATCTTGGAACAATCAAATCTTCCAATTTGTGTACTGAGATCATTG AGTATACAAGTCCAACTGAAACTGCTGTGTGCAATTTGGCATCAATTGCACTACCTCGCTTTGTTAGAGAAAAAGGAGTGCCAATGGAATCACATCCATC TAAGCTAGTTGGAAGCAGAGGGTCCATGAACAGATTCTTTGATTTTGACAAATTAGCTGAGATTACACAAGCGGTGACTTATAATCTCAACAAAATAATC GATGTTAACTATTACCCTGTTGAGACTGCAAAGAGGTCAAATTTAAGACACAGGCCGATTGGAATTGGAGTCCAGGGTCTTGCCGATACCTTCATTTTAC TTGGCATGCCATTTGAGTCCCCTGAGGCTCAACAGCTAAACAAGGATATATTCGAAACAATTTATTACCATTCCTTGAAAGCATCTTCTGAGATTGCAGC AGTAGAAGGTCCTTATGAAACATATGCTGGAAGTCCCGTGAGTAAGGGTACTTTGCAGCCAGACATGTGGGGAGTCACTCCATCGAGCTTGTGGAACTGG GAGGTCTTGAGAGAGATGATATCAAAGAACGGCGTCAGGAACTCACTTCTGGTGGCACCTATGCCTACTGCTTCAACCAGTCAGATTCTTGGAAACAATG AGTGCTTTGAGCCATACACTTCCAATATCTATAGTCGCAGGGTTTTAAGTGGTGAATTCGTTGTAGTTAACAAACATCTTCTGAATGATCTGACTGAGAT GGGTATATGGTCCCCTGCCATCAAGAATAGAATCATTTACGAAAATGGTTCTGTCCAGAAGCTCCCAGAAATCCCTGAGGATCTGAAGCTCATTTACAAG ACCGTATGGGAGATCAAGCAGAAGACTTTGGTGGATATGGCTGTTCATCGTGGATGCTACATAGATCAGAGCCAAAGCCTTAACATACACATGGACCAAC CCAATTTCGGAAAGCTGACTTCCTTGCATTTCCATACATGGTCCAAGGGTCTAAAGACAGGAATGTACTATCTAAGATCACGAGCTGCAGCCGATGCAAT CAAGTTTACAGTAGACACCACCGATCTCAAGGATAAGAAGGCAAAGGTGGAGGCCGATGAAGAAGATGATGGTACCAAAATGGCTCAGATGGTCTGCTCT CTAAGCAACCGTGATGAATGTCTTGCTTGCGGAAGTTGA
AA sequence Show only first row Show all	>Lus10033526 pacid=23143479 polypeptide=Lus10033526 locus=Lus10033526.g ID=Lus10033526.BGIv1.0 annot-version=v1.0 MYVVKRDGRQETVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNLHKNTMKSFSETIKV MYTHFNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSVGIHKDDIDSAIKTYHFMSQRWFTH ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGASNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY LEPWHADIFEFLDLRKNHGSEEHRARDLFYALWVPDLFMERVQSNGTWSLFCPNEAPGLADCWGKEFEELYTKYERDGKAKKVVQAQSLWFEILTSQIET GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPMESHPSKLVGSRGSMNRFFDFDKLAEITQAVTYNLNKII DVNYYPVETAKRSNLRHRPIGIGVQGLADTFILLGMPFESPEAQQLNKDIFETIYYHSLKASSEIAAVEGPYETYAGSPVSKGTLQPDMWGVTPSSLWNW EVLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTEMGIWSPAIKNRIIYENGSVQKLPEIPEDLKLIYK TVWEIKQKTLVDMAVHRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSKGLKTGMYYLRSRAAADAIKFTVDTTDLKDKKAKVEADEEDDGTKMAQMVCS LSNRDECLACGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10033526 [exp]	0	1
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	1.4	0.9494
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	7.5	0.9420
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	7.7	0.9492
AT4G14180		ATPRD1	putative recombination initiat...		Lus10002081 [exp]	9.9	0.9284
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	12.0	0.9373
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	12.6	0.9372
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10000708 [exp]	12.7	0.9159
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	15.9	0.9371
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	16.7	0.9319
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	20.0	0.9347

Compare expression of checked genes

Lus10033526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.