Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24630 385 / 7e-133 DHHC-type zinc finger family protein (.1) AT5G50020 382 / 3e-131 DHHC-type zinc finger family protein (.1.2) AT3G26935 338 / 4e-114 DHHC-type zinc finger family protein (.1) AT5G41060 329 / 4e-111 DHHC-type zinc finger family protein (.1.2) AT3G56930 298 / 1e-97 DHHC-type zinc finger family protein (.1.2) AT3G48760 294 / 3e-96 DHHC-type zinc finger family protein (.1) AT5G05070 270 / 2e-87 DHHC-type zinc finger family protein (.1) AT2G40990 246 / 3e-78 DHHC-type zinc finger family protein (.1) AT3G56920 234 / 7e-75 DHHC-type zinc finger family protein (.1) AT3G51390 86 / 2e-18 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020844 [exp] 613 / 0 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10028687 [exp] 403 / 1e-138 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 396 / 9e-137 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 357 / 3e-121 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 353 / 9e-120 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 300 / 1e-98 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 298 / 6e-98 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 288 / 4e-94 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 284 / 1e-89 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077000 [exp] 443 / 2e-156 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 415 / 3e-144 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 410 / 1e-142 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 343 / 7e-116 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 338 / 1e-113 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 324 / 2e-108 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 320 / 6e-107 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 311 / 3e-103 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 308 / 6e-102 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 299 / 1e-97 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033527 pacid=23143252 polypeptide=Lus10033527 locus=Lus10033527.g ID=Lus10033527.BGIv1.0 annot-version=v1.0 ATGAAGATGAAGAAGAAGAACAACATCCGCTCCCACAAGCTTATATTCCTGTTCAAAGGAAGGATAATCCTTGGACCAGATGCAAGGTCAGTGGGGATCA CCTTGTTGCTAATAGTGGTACCAGTTATCATCTTCTGCACATGTGTAGCTACCAACCTTGTCAAGGAATTCCCTCCAACATCTACCCTACGCTACGCCAT CCCTTTGGCATCCATTCTCTTCACAATCTACGTGCTAGTACTGCTTCTTGTTACTTCAGGACGAGACCCTGGAATTGTTCCGAGGAATAACCATCCACCA GAAGAGGACAGTTTCCACAATTCAGTTAGAATGGAGGGGAGTGGGACACAGACTCCAACACCAAGGCTACCTAGGATGAAAGAAGTGTTTGTCAATGGTC TGCCTGTTAAAGTGAAGTACTGCGAGACTTGCTTGCTGTATCGCCCTCCTCGTTGCTCCCATTGCTCCGTTTGTGATAACTGCGTTGAGAGATTCGATCA CCATTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGAAATTATCGATACTTCTTTCTATTTGTCTCATCGTCGGCTCTTCTCTGCATCTATGTCCTTGCA ATGTCAGCTTGGAACATGAAGTTCCTCATCGACAGGCACGATGTACTCTGGAAGGCAATCAAAGAGTCCCCAGCATCTGTAGTCCTCATCATCTATTGCT TCATTTTCCTATGGTTTGTTGGAGGCCTCACTTGTTTCCATCTCTATCTCATTAGCAGAAACCAGACTACGTACGAGAATTTCCGATATGGAGCTGTGAA TCGGGTGAATGTGTATGATAGAGGCTGCTTGAGGAACTTCCTTGAAGTGTTCTGCACCAAGACTAAGCCTTCCAGGAACAATTTCCGGGCATTCGTGCGA GAAGATCAGCAATTGCCCACAGTGCTGCATTTGAGTGAAGGCAATAATGTTGGTGTAGATGGCGGTGACCGTAGAGTGAAGGTGGAGGACAACTCAGAGA TCGATAAGGACTTCATGAAGATCTCCGAGCGGCATGTTGCTGTAGAAGATGGCATCTGTAACAGGACATGA
AA sequence Show only first row Show all	>Lus10033527 pacid=23143252 polypeptide=Lus10033527 locus=Lus10033527.g ID=Lus10033527.BGIv1.0 annot-version=v1.0 MKMKKKNNIRSHKLIFLFKGRIILGPDARSVGITLLLIVVPVIIFCTCVATNLVKEFPPTSTLRYAIPLASILFTIYVLVLLLVTSGRDPGIVPRNNHPP EEDSFHNSVRMEGSGTQTPTPRLPRMKEVFVNGLPVKVKYCETCLLYRPPRCSHCSVCDNCVERFDHHCPWVGQCIGVRNYRYFFLFVSSSALLCIYVLA MSAWNMKFLIDRHDVLWKAIKESPASVVLIIYCFIFLWFVGGLTCFHLYLISRNQTTYENFRYGAVNRVNVYDRGCLRNFLEVFCTKTKPSRNNFRAFVR EDQQLPTVLHLSEGNNVGVDGGDRRVKVEDNSEIDKDFMKISERHVAVEDGICNRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	1.0	0.8252
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	3.7	0.8211
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	7.1	0.7534
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	7.5	0.7484
					Lus10002061 [exp]	7.7	0.8092
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	7.7	0.7757
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	10.7	0.8162
AT2G33580			Protein kinase superfamily pro...		Lus10022489 [exp]	11.2	0.7117
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	13.4	0.7224
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	13.5	0.7929

Compare expression of checked genes

Lus10033527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.