Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39370 417 / 3e-141 UBP27 ubiquitin-specific protease 27 (.1.2.3) AT4G10570 66 / 4e-11 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 65 / 1e-10 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 64 / 3e-10 UBP11 ubiquitin-specific protease 11 (.1) AT2G32780 62 / 9e-10 ATUBP1 ubiquitin-specific protease 1 (.1) AT2G24640 59 / 5e-09 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 59 / 8e-09 UBP18 ubiquitin-specific protease 18 (.1) AT5G57990 59 / 9e-09 UBP23 ubiquitin-specific protease 23 (.1) AT1G04860 57 / 3e-08 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT4G39910 56 / 3e-08 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020843 [exp] 941 / 0 AT4G39370 407 / 2e-137 ubiquitin-specific protease 27 (.1.2.3) Lus10026918 [exp] 63 / 5e-10 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 62 / 6e-10 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 61 / 2e-09 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10024043 [exp] 59 / 6e-09 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10041705 [exp] 59 / 6e-09 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10038994 [exp] 59 / 6e-09 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10027289 [exp] 59 / 6e-09 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10008276 [exp] 58 / 1e-08 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077100 [exp] 577 / 0 AT4G39370 342 / 6e-112 ubiquitin-specific protease 27 (.1.2.3) Potri.017G055600 [exp] 68 / 1e-11 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.001G315600 [exp] 67 / 2e-11 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.006G266100 [exp] 66 / 4e-11 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.016G031900 [exp] 65 / 8e-11 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G033800 [exp] 65 / 1e-10 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G378900 [exp] 60 / 3e-09 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G017000 [exp] 59 / 4e-09 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.007G093600 [exp] 59 / 4e-09 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.006G185200 [exp] 59 / 7e-09 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10033528 pacid=23143450 polypeptide=Lus10033528 locus=Lus10033528.g ID=Lus10033528.BGIv1.0 annot-version=v1.0 ATGATCCGGAACTACTTATCGTCTCAAATGAAGTGGGGTTCGACATCTGGGTTTCCCTTACCACTGGCCGCCGCCGTGTTAGCCGCCGCCGGTTTGATCG TCGCCGTCATAAGGGACCGTCAATTGGGCTTCCTTTGGTTGCCTCAGAGAAAAGATCGCCGGGATCTGCTCTTAGTTCCTGGCCTCCAGAACTTGGGGAA CAATTGCTTTCTGAATGTGATACTCCAGGCTTTGGCAAGTTGCTCCCCTTTCCAACCCTTTCTTCACAAGATAATTGAAGATTGCGAATCCGAGGATTGG AGTGATGGTTTGCAGCTAACTGTTGCTTTGGCTTCTTTGTTGGAAGATTTATGTGCATATGGAGAAGGCAGGACGGTGTTAAGTCCACGGCAGGTGATGC TTGCAATGGCGCAGTATATTCGAAACTTCAACCTCACCAGCCAACAGGATGCAGAAGAAGCGTTCCTTCACTTGCTGTCCTCTTTGAGAGAAGAATTTAC CGATTGTTACCTTCCGAACCAGAGTTCACTGTTAGAGATTGTTCAGACTTACCATTCCAGGATTCTGACACCAAAAGGACATCAACTTCAGAATGAAAAA GAAAGATGGCAGCAACACTTCCTTGGACCATTCGACGGTATTCTTAGCAGCACGTTGATGTGCCAAACTTGTTCTTCTCAGATTTCAATGAACTTCCAAT TCTTCCATAGTTTGCCCCTTCTGCCGGTGCTTGGATTTGGTGCCCCAATTATCGTTGGATGCACACTGGAGGATTGCCTAAAACGGTTTATAGCTCCTGA GCAACTTGATAATTATCACTGTAGCCATTGCTGGCATCTTGTTGCCATCAAATATCTACGTCTAAGAGGAGCATTAGAGTGCAATATTGAGAAAGTCACG AGATGCACCGAGAACGAACCATGCGCATGTCATAATCATTTGCATCTAGAGAATCTACCTTGGTCGAATAACTACTCACGAACTTTGAAAGGACTTAGTA TTGCTCGTTGCCCAAAGATTCTTTGCATTCATCTGCAACGTGCTTCGATTAATCACTTCGGAGAGCCAATTAAACTTCAGGGCCATATTCGGTTTCCCTT AGTTTTGGACCTGCTTCCATTTACGCTGAAAGAGTTACAATCCGATAAACAAAGCTCTCATTCGAACAAACCCAACGTCTCATCATCTCATCCGGTGGTT CGAGCTTGCATCAGTATCCAAAATCCTGCATCTGAAGAAGTATTAGCATCAGACAAACTTGAGTCCTCCGAGCAATTGCAGACCAACATAGGAGAGCCCA AGTTGGTCGAAACAAAAGTCGATGTGGAGACTATTGGAGCGGATACAAACTTCCCAGCTGAGGACAAGGTGCATGAAGTGGTGTCCTCGGAATCTTACAT GTATCGTCTCGTATCAGTGGTGGAGCACTTTGGCCGATCAGGAGGTGGTCACTATACTGTTTACAGAAGCGTGAGGTGCGATTCCCCCGAGGACAATGGG GAGGAGGAGAAGAAGCCTTCCAATCTGCACTGGTTCTGCGTCTCGGATTCGCAGGTTTCTCGAGTATCGGAGGAGGATGTTCTTTCTGCAGAGGCAAGCT TGCTGTTTTATGAAAGAATTGCATAA
AA sequence Show only first row Show all	>Lus10033528 pacid=23143450 polypeptide=Lus10033528 locus=Lus10033528.g ID=Lus10033528.BGIv1.0 annot-version=v1.0 MIRNYLSSQMKWGSTSGFPLPLAAAVLAAAGLIVAVIRDRQLGFLWLPQRKDRRDLLLVPGLQNLGNNCFLNVILQALASCSPFQPFLHKIIEDCESEDW SDGLQLTVALASLLEDLCAYGEGRTVLSPRQVMLAMAQYIRNFNLTSQQDAEEAFLHLLSSLREEFTDCYLPNQSSLLEIVQTYHSRILTPKGHQLQNEK ERWQQHFLGPFDGILSSTLMCQTCSSQISMNFQFFHSLPLLPVLGFGAPIIVGCTLEDCLKRFIAPEQLDNYHCSHCWHLVAIKYLRLRGALECNIEKVT RCTENEPCACHNHLHLENLPWSNNYSRTLKGLSIARCPKILCIHLQRASINHFGEPIKLQGHIRFPLVLDLLPFTLKELQSDKQSSHSNKPNVSSSHPVV RACISIQNPASEEVLASDKLESSEQLQTNIGEPKLVETKVDVETIGADTNFPAEDKVHEVVSSESYMYRLVSVVEHFGRSGGGHYTVYRSVRCDSPEDNG EEEKKPSNLHWFCVSDSQVSRVSEEDVLSAEASLLFYERIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10033528 [exp]	0	1
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	3.5	0.9123
AT5G55060			unknown protein		Lus10040061 [exp]	7.7	0.9265
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	10.0	0.9148
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	11.5	0.9123
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10019061 [exp]	11.7	0.8889
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	12.2	0.8917
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	22.8	0.9103
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	25.6	0.9100
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	25.7	0.9117
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	26.7	0.8904

Compare expression of checked genes

Lus10033528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.