Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39380 213 / 3e-63 unknown protein AT2G36960 155 / 7e-41 MYB TKI1 TSL-kinase interacting protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020841 [exp] 437 / 6e-154 AT4G39380 99 / 1e-23 unknown protein Lus10020840 [exp] 172 / 1e-52 ND 37 / 0.001 Lus10013816 [exp] 159 / 3e-42 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Lus10026528 [exp] 74 / 6e-14 AT2G36960 526 / 4e-178 TSL-kinase interacting protein 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077700 [exp] 328 / 2e-109 AT4G39380 245 / 2e-76 unknown protein Potri.005G086800 [exp] 327 / 6e-109 AT4G39380 245 / 2e-76 unknown protein Potri.016G091700 [exp] 152 / 6e-40 AT2G36960 665 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.006G125400 [exp] 149 / 7e-39 AT2G36960 680 / 0.0 TSL-kinase interacting protein 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033530 pacid=23143438 polypeptide=Lus10033530 locus=Lus10033530.g ID=Lus10033530.BGIv1.0 annot-version=v1.0 ATGCGAGGTAGTAAGAATAAGGCAGCGAAGCCAGCTGATGTCCCAGTAATGGTGAAGGATGGGATGAGTTTGTCTCAGAACAGCAAACCCGCTAAGAGGA CTAGAAGGCAGTCTCAAAAGCGAACAGGTTTACTTCCGCCAAAAGATGAATCTCCTTTGCCTTCCACAGCAGCTAGAGTAACGAATGTGTTGCCTGGACT TGAGGAGAAACCAGGAACTTCTGTACCTCGTGGAAAGATCAAGTTGCAGTTATTCCCCATAGATGAAAACACGTTGAGGGGATTGGAGAAGGAGGGATAC CATCCCTACTTAGAACTCACTCTAAGTGCTAGGAAGAAGATATCTTCTGTGCTGCAGCACCTCAATGGAAAATGGGGTAAATCAAGCATTGCTGTTGGGC AACCAATTCTTTTCCCATACGATCGAACTGGAGATTTATCTAGCTGCAAGTGGACCTCAGATGACACTGATGTCTGTGCTGAAGCTATCTTCATAGCTGT GGGAAAGCCTTCTGTATTTCGTTTAAGGTACGGCTGGTTCTCTCATTGCGAAGCCAGATCCCATGGTGTGGGGGCTCTCTCGATGAATGATGGTGCTTGC TTGCCATTTACAGAAACTGAGAAGTGGTGCAAGAAAGAGGTTGAAACAGTTGATGTAAAAAGCAAGCAAAATGAGGAAGTGAATGAAGAGACCGAAGCTG CCATTTCAAGTGGAGCAAGGGTCAATATGATTTCTTCAAATGCGTTAGTTGAACCAGAGAGTGGCAGAAGCAGGGAGGATGTTTGTGCTGGGCAGTTATC AGTACCTTGGGATGATGGCATGACTAACATCAGCATCGGCGGCTTACTATCTGAAGCATCCTTGCAAGGGAAGTTGAACAGATCTGACGCACAAACAAAT GGAAACAACTCTATGTTCTTCTCTGACTCGATTGATGCTTTCCTTGCTGCCAAAACAAACTCATCATCACGTCCAGGGATGTTTGCTCCTAGTTTAAACT CTTCCATCTTGAATGCTGATGATACATGCCAACCATTTTCATTTCAACCCATCGGTTCATCAAGCAAAAAATCTCCGTCTTTCGGAGCAAGTTCTTTCCA GAATGGAAACAAGGAAGCTGTTCCTAAGTCGGTGAATTCCCAATGTGGCGATGTAGAAGGTCAGGGAAGTCGCGAGTCTGAAACAAACATGCTGGCTTGT CCAGGTCCAGGAGCATATAACGATGAAAGCAGCCTTGGACTATCCGGCATAAAATGGACAGAGTCCCTCGGACCTTTTGATCTTGGCCTAACTTCGTCCA GAAAGATTATTCTTGATGACAGTCTAAGCGTTGGCAGAATATTCAGCTAA
AA sequence Show only first row Show all	>Lus10033530 pacid=23143438 polypeptide=Lus10033530 locus=Lus10033530.g ID=Lus10033530.BGIv1.0 annot-version=v1.0 MRGSKNKAAKPADVPVMVKDGMSLSQNSKPAKRTRRQSQKRTGLLPPKDESPLPSTAARVTNVLPGLEEKPGTSVPRGKIKLQLFPIDENTLRGLEKEGY HPYLELTLSARKKISSVLQHLNGKWGKSSIAVGQPILFPYDRTGDLSSCKWTSDDTDVCAEAIFIAVGKPSVFRLRYGWFSHCEARSHGVGALSMNDGAC LPFTETEKWCKKEVETVDVKSKQNEEVNEETEAAISSGARVNMISSNALVEPESGRSREDVCAGQLSVPWDDGMTNISIGGLLSEASLQGKLNRSDAQTN GNNSMFFSDSIDAFLAAKTNSSSRPGMFAPSLNSSILNADDTCQPFSFQPIGSSSKKSPSFGASSFQNGNKEAVPKSVNSQCGDVEGQGSRESETNMLAC PGPGAYNDESSLGLSGIKWTESLGPFDLGLTSSRKIILDDSLSVGRIFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39380			unknown protein		Lus10033530 [exp]	0	1
AT1G61000			unknown protein		Lus10012690 [exp]	1.4	0.9062
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	3.3	0.8532
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	3.5	0.8799
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	3.7	0.8949
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10022452 [exp]	4.0	0.8749
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	4.9	0.8687
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	9.2	0.8306
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009016 [exp]	11.5	0.8526
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	11.8	0.8545
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	15.0	0.8602

Compare expression of checked genes

Lus10033530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.