Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02080 259 / 2e-90 Ribosomal protein S19e family protein (.1) AT5G61170 256 / 4e-89 Ribosomal protein S19e family protein (.1) AT5G15520 253 / 5e-88 Ribosomal protein S19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020836 [exp] 303 / 1e-107 AT3G02080 258 / 5e-90 Ribosomal protein S19e family protein (.1) Lus10013188 [exp] 290 / 2e-102 AT3G02080 259 / 2e-90 Ribosomal protein S19e family protein (.1) Lus10010339 [exp] 230 / 6e-79 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10000095 [exp] 230 / 6e-79 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10030702 [exp] 228 / 2e-78 AT3G02080 215 / 2e-73 Ribosomal protein S19e family protein (.1) Lus10021865 [exp] 227 / 5e-78 AT3G02080 216 / 7e-74 Ribosomal protein S19e family protein (.1) Lus10032992 [exp] 225 / 3e-77 AT3G02080 218 / 1e-74 Ribosomal protein S19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118800 [exp] 261 / 4e-91 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1) Potri.017G092200 [exp] 258 / 4e-90 AT5G61170 270 / 5e-95 Ribosomal protein S19e family protein (.1) Potri.015G056100 [exp] 255 / 5e-89 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01090 [flax] [poplar] Ribosomal_S19e Ribosomal protein S19e
Representative CDS sequence Show only first row Show all	>Lus10033532 pacid=23143413 polypeptide=Lus10033532 locus=Lus10033532.g ID=Lus10033532.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTGGAGATGTCGTCAAGGCTGGCACCGTCAAGGATGTCTCGCCTCATGAGTTCGTCAAGGCTTATGCTGCTCACCTCAAGCGATCTGGCA AGATCGAGCTACCCCCATGGACGGATATTGTCAAGACTGGCAAACTGAAGGAACTTGCACCTTACGATCCCGACTGGTACTACATAAGAGCTGCGTCCAT GGCTAGAAAGGTTTACCTAAGGGGAGGCCTAGGTGTTGGTGCATTCCGGAGGATCTATGGTGGAAGCAAGAGGAACGGAAGCCGTCCTCCCCATTTCTGC AAGAGCAGTGGTGCTGTTGCCCGCCATATTCTTCAACAACTGGAGGCAGTCAACATTGTGGAAGTCGTTCCCACCGGAGGGAGGAGAATCACTTCGAATG GACAAAGGGATCTGGACCAAGTTGCAGGGAGGATTGTGGTTGTTGCCCCATGA
AA sequence Show only first row Show all	>Lus10033532 pacid=23143413 polypeptide=Lus10033532 locus=Lus10033532.g ID=Lus10033532.BGIv1.0 annot-version=v1.0 MAAAGDVVKAGTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFC KSSGAVARHILQQLEAVNIVEVVPTGGRRITSNGQRDLDQVAGRIVVVAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02080			Ribosomal protein S19e family ...		Lus10033532 [exp]	0	1
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	3.5	0.9017
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	5.7	0.9071
AT5G26800			unknown protein		Lus10015444 [exp]	5.7	0.9040
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	7.5	0.9000
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	12.0	0.8924
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	13.2	0.8947
AT1G15420			unknown protein		Lus10030351 [exp]	13.7	0.8859
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	15.9	0.8694
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	17.0	0.8930
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	17.6	0.8889

Compare expression of checked genes

Lus10033532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.