Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39400 1436 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 980 / 0 BRL1 BRI1 like (.1.2) AT3G13380 975 / 0 BRL3 BRI1-like 3 (.1) AT2G01950 890 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 559 / 3e-179 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74360 496 / 4e-156 Leucine-rich repeat protein kinase family protein (.1) AT5G53890 484 / 1e-152 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT2G02220 467 / 2e-146 ATPSKR1 phytosulfokin receptor 1 (.1) AT3G49670 466 / 5e-146 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 464 / 2e-145 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020835 [exp] 2134 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 1476 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 1474 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 892 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038726 [exp] 888 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 509 / 2e-159 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10009213 [exp] 500 / 2e-158 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 495 / 1e-156 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10014996 [exp] 489 / 8e-152 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086500 [exp] 1564 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 1539 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 1010 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 989 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 911 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 898 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.015G141200 [exp] 549 / 3e-174 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 541 / 3e-171 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G398500 [exp] 503 / 1e-159 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 499 / 2e-157 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033533 pacid=23143488 polypeptide=Lus10033533 locus=Lus10033533.g ID=Lus10033533.BGIv1.0 annot-version=v1.0 ATGCTGACCAAATCCCACCTACTCGTTTTCCCACTCCTCCTCCTCCTCTCATCGGCAGCGAGTCAAGACAGCCGGAGTCTCCTCACCGCCTTCAAATCCT CCTTACCCCACCCACCGCCGCCACTCCTCTCCAACTGGGTACCGAACCAAGACCCTTGTACCTTCAATGGAGTCAAATGCCGTGACAACAACACAGTCTC CTCCATTGACCTAAGCTTCGTCCCTTTAAGCTCTGATTTCAAATCCGTTGCGTCTTTCCTTCTCTCCATCGACTCCCTGGAAACCCTATCTCTCCAATCA GCTAATATCTCCGGCTCCTTATCTTCCGGATCTTCTTCCAAGTGCAGCTCTGTTTTGACCGGATTAGATCTCTCCCTCAACTCCCTCTCCGGTCCTATCT CTGATATTGCTGCTCTGTCTTCTTGCTCGGGTTTAAAAACTCTGAATCTCTCCAGAAACTCTCTTGATTTCTATGTTAAGGGGAAATGGAGCGGCCTCAA ACTTGGATTGTTAGAGTCGTTGGATCTTTCCTGGAACAAGATTTCAGGCTCCGACGCTATCTCCTTCGTCCTGCTTGGAGGCTGCAAAGACTTGAAGCTT CTGGCGATGAGAGGGAACAAAGTCGCCGGCGACGTCGACGTCTCCGGTTGCTCGAGTCTCGAGTATTTCGATATATCGTTGAATAACTTCTCCGGCTCTG CTCTTCCCAACTTCGGCGGCTGCTCTTCGCTCCAACACCTCGACATCTCCCGGAACCGATTCTCCGGCGATCTCGTCCGGTCAATCGGTTCGTGTTCAAA GCTCAGTTTCCTCAACGCCTCCGCTAATCTCTTCTCCGGAGAAATCCCGGCGGGACTTCCGACGGGGAATTTGCAGTTTCTATCTTTATCCGGCAACGAT TTCCAAGGAAAAATCCCTCCGGAGATCACCGATGCTTGTCGAGGTCTCGTAATCCTCGACCTCTCTTCCAACAATCTCTCCGGCGAGGTTCCGCCGGCGT TGACTTCTTGCACTTCCTTGCAGACTCTCGACATTTCGGTGAACAACTTCACCGGCGAAATCCCTATTCCCGTGCTGCTAAAAATGGTAAGCTTGAAGAG AATACTTCTTTCTTACAACAATTTCGTTGGTGAGCTGTCTGATTCTTTCTCGGCGATGATGAATTTGGAGTCCTTGGATGTGAGTTCTAACGATTTGAAA GGTCAAATCCCCGCCGGAATCTGTCAAAACCCTAACGGAAACTTGAAAGAGATCTTCTTCCAGAACAATCAGTTCACCGGATCAATACCTGCCAGTTTAA GCAACTGTACTCAGCTAACTTCACTTCATTTGAGCTTCAATTACCTCACAGGAACGATTCCTCCAAGCTTGGGATCCTTAACCAAGCTCCAGGATTTGAA GCTCTGGTTCAACCAGCTTTACGGAGAGATCCCCCTGGAGATAATGTCGATTCCGAATTTGCAGACATTGATTCTCGACTTCAACGAGCTTACAGGAGCA ATACCTTCAAGCATAAGCAACTGCACTAACCTGAACTGGATCTCATTATCCAACAATAGGCTTCGCGGCGAAATCCCTTCCACGATTGGCAAGCTATCGA GCCTCGCAATCTTGAAGCTCAGCAACAACTCTCTCCAAGGTCCGATTCCAGATGAGCTTGGGGACTGCAAGAGCTTGATTTGGCTCGATTTGAACACCAA CGGGCTAACAGGTTCGATACCGCCCAGTCTGTTCAAGCAGTCTGGGAAAATTGCTGTGAATTTCATCACGGGGAAGAGGTTTGTGTTCTTGAAGAATGAC AAGAGTGATTACTGCCATGGAACCGGGAATCTGCTCGAGTTTGCCGGGATAAGGCCCGAAAACCTGGATCGAGTCTCGGCCAGGCATCCGTGCAATTTCA CCAGGGTGTATGGAGGGCATACTCAGCCTACATTCAACGACAACGGTTCGATGATCTTTCTCGATCTCTCTTACAATCGGCTGACCGGTACGATTCCTAA GGAGATTGGGACCATGTCATACTTGTACATTATGAATTTTGGACACAACAATTTATCTGGAAGCATACCTCAGGAGCTTGGCGACTTGAAAGGTATCAAC ATTTTGGACCTTTCGAGCAATAGCCTCGGAGGGACTATTCCGCAGTCGATGACTGGACTGTCATTGTTAACAGAGATCGATCTTTCGAACAACCATCTCA CTGGGACGATCCCTGAAATGGGACAGTTTGAGACGTTCCAAGATCGAAGCTTTTTAAACAACTCCGGCCTCTGCGGAATCCCTCTTCCTCCCTGTGGCTC GCCCTCTCCGAATTCTCCGCAAAAGTCTCACCGGAGGAGACAAGCGTCGCTCATCTGGAGCGTTGCGATGGGGCTTTTGTTCTCGTTTTTATGCATCTTC ATCGCGTTTTTCATTTCCTCGGAGGTTAAGAGAAGGAAGAGGAAGAAGGAGGAAGCTAATCTTGATGTATTCATGGATAATCATAATACACATTCAGGAA ATGCTAATACTAGCTGGAAGCTGACCGGTGCGAGGGAAGCATTGAGCATAAACCTTTCGACATTCGACAGGCCACTTCGGAGGCTGACATTCGCTGATCT TCTCCAAGCTACAAACGGCTTCCACAACGATAGTCTTATTGGTTCTGGAGGGTTTGGAGATGTGTACAAGGCTCAGCTGAAAGACGGCAGCGTTGTAGCA ATCAAGAAGCTTATACAGATAAGCGGACAAGGCGATCGAGAATTCACCGCCGAAATGGAGACGATTGGCAAAATAAAGCACCGGAACCTCGTCCCTTTAC TCGGATACTGCAAAGTAGGAGAAGAGAGGCTGTTGGTGTATGAGTACATGAAGTATGGAAGCTTAGAAGATGTTCTTCATGACCAGACGAAATCCGGGAT AACACTAAACTGGAATTCGAGACGGAAGATAGCCATCGGTGCTGCGAGGGGGTTAGCATTCCTTCACCACAACTGCAGTCCGCATATAATCCACCGAGAC ATGAAATCGAGCAATGTACTTCTGGACGAGAATTTGGAACCGCGAGTCTCCGATTTCGGGATGGCGAGGCTTATGAGTGCAATGGACACACATTTAAGTG TGAGCACATTGGCAGGCACGCCGGGGTACGTCCCTCCCGAGTATTATCAAAGTTTTCGATGTTCGGTGAAAGGCGATGTGTACAGCTATGGAGTCGTGTT GCTAGAGCTGTTAACGGGGAGGAGGCCTACAGATTCGGCTGATTTCGGAGACAATAATTTAGTAGGGTGGGTGAAGCAGCATGCCAAGATGAGAATAAGC GACGTGTTCGATCCGGTGTTAATGAAGGAGGATCCGGGTTTGGAGATCGAGCTTTTGCAGCACTTGAAGGTGGCGTGTGCTTGCCTCGAGGACCGGCAAT GGAAGCGGCCCACGATGATTCAAGTGATGGCGATGTTCAAGGAGATCCAAGCTGGGTCGGGGCTGGATTCGCAGTCGACAATCGGTACAGAAGATGATGA TGGAGATTTTGTTGCCGTAGATATGATAGAGATGACTATAAAAGAAGTACCTGAACCAGGCTGCAAAGAGTAG
AA sequence Show only first row Show all	>Lus10033533 pacid=23143488 polypeptide=Lus10033533 locus=Lus10033533.g ID=Lus10033533.BGIv1.0 annot-version=v1.0 MLTKSHLLVFPLLLLLSSAASQDSRSLLTAFKSSLPHPPPPLLSNWVPNQDPCTFNGVKCRDNNTVSSIDLSFVPLSSDFKSVASFLLSIDSLETLSLQS ANISGSLSSGSSSKCSSVLTGLDLSLNSLSGPISDIAALSSCSGLKTLNLSRNSLDFYVKGKWSGLKLGLLESLDLSWNKISGSDAISFVLLGGCKDLKL LAMRGNKVAGDVDVSGCSSLEYFDISLNNFSGSALPNFGGCSSLQHLDISRNRFSGDLVRSIGSCSKLSFLNASANLFSGEIPAGLPTGNLQFLSLSGND FQGKIPPEITDACRGLVILDLSSNNLSGEVPPALTSCTSLQTLDISVNNFTGEIPIPVLLKMVSLKRILLSYNNFVGELSDSFSAMMNLESLDVSSNDLK GQIPAGICQNPNGNLKEIFFQNNQFTGSIPASLSNCTQLTSLHLSFNYLTGTIPPSLGSLTKLQDLKLWFNQLYGEIPLEIMSIPNLQTLILDFNELTGA IPSSISNCTNLNWISLSNNRLRGEIPSTIGKLSSLAILKLSNNSLQGPIPDELGDCKSLIWLDLNTNGLTGSIPPSLFKQSGKIAVNFITGKRFVFLKND KSDYCHGTGNLLEFAGIRPENLDRVSARHPCNFTRVYGGHTQPTFNDNGSMIFLDLSYNRLTGTIPKEIGTMSYLYIMNFGHNNLSGSIPQELGDLKGIN ILDLSSNSLGGTIPQSMTGLSLLTEIDLSNNHLTGTIPEMGQFETFQDRSFLNNSGLCGIPLPPCGSPSPNSPQKSHRRRQASLIWSVAMGLLFSFLCIF IAFFISSEVKRRKRKKEEANLDVFMDNHNTHSGNANTSWKLTGAREALSINLSTFDRPLRRLTFADLLQATNGFHNDSLIGSGGFGDVYKAQLKDGSVVA IKKLIQISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQTKSGITLNWNSRRKIAIGAARGLAFLHHNCSPHIIHRD MKSSNVLLDENLEPRVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSVKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKMRIS DVFDPVLMKEDPGLEIELLQHLKVACACLEDRQWKRPTMIQVMAMFKEIQAGSGLDSQSTIGTEDDDGDFVAVDMIEMTIKEVPEPGCKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	0	1
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	2.8	0.9235
					Lus10015758 [exp]	3.7	0.9391
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	4.9	0.9421
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	6.0	0.9128
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	7.1	0.8930
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	7.9	0.9233
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	8.5	0.9360
AT1G74790			catalytics (.1)		Lus10033116 [exp]	10.4	0.9304
					Lus10014817 [exp]	10.7	0.9019
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027954 [exp]	11.0	0.9073

Compare expression of checked genes

Lus10033533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.