Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25780 246 / 8e-82 AOC3, AOC2 allene oxide cyclase 3 (.1) AT1G13280 243 / 1e-80 AOC4 allene oxide cyclase 4 (.1) AT3G25770 232 / 1e-76 AOC2, AOC3 allene oxide cyclase 2 (.1) AT3G25760 228 / 7e-75 AOC1, ERD12 early-responsive to dehydration 12, allene oxide cyclase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017571 [exp] 428 / 5e-154 AT3G25780 266 / 6e-90 allene oxide cyclase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102500 [exp] 302 / 3e-104 AT3G25780 261 / 6e-88 allene oxide cyclase 3 (.1) Potri.008G117300 [exp] 263 / 7e-89 AT3G25780 275 / 4e-93 allene oxide cyclase 3 (.1) Potri.017G112400 [exp] 192 / 2e-62 AT3G25780 172 / 1e-54 allene oxide cyclase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF06351 [flax] [poplar] Allene_ox_cyc Allene oxide cyclase
Representative CDS sequence Show only first row Show all	>Lus10033535 pacid=23143280 polypeptide=Lus10033535 locus=Lus10033535.g ID=Lus10033535.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCACATTCGCTTCCGCCGGCGCATCCATCAAGCTCGCCAGCCGCCACATACTCAGATCAACTTTCCTCGCCGCCGGCAAGACTTCCCAGC TCAACCTCACTCCCCTGTTCCGTAGTCCCCGATCACTGAGAACATCCGCTCTTCCCGGAGCAAGATCTTTCTCCTGCAATAGCCAAGCCGCTTCTACCGG CGCCGACTACACCAGACCGTCCAGTAATGTTCAGGAACTCCACGTTTACGAGATCAACGAGCGAGATCGCGGCAGCCCTGCGGTCCTCCGATTGAGCCAG AAGCCCGTCAATTCCCTCGGCGATCTCGTCCCTTTCAGCAACAAACTGTACAGCGGGGACCTGAAGAAGAGAATCGGGATCACGGCGGGGATATGCGTGC TGATCCAGCACAAGCCGGAGAAGAAAGGTGACCGGTACGAGGCGATCTACAGCTTCTACTTCGGCGACTACGGCCAAATCTCCGTCCAGGGGTCGTACCT CACCTACGAAGACAGCCACCTTGCCGTCACGGGAGGCACGGGGATCTTCGAAGGAGTGTACGGACAGGTGAAGCTGAATCAGATCGTCTTCCCCTTCAAG CTCTTCTACACTTTCTACCTCAAGGGGTTGAAGGCCGACTTGCCCCAGGAACTGCTCGAGGCGCCCGTCGAGCCCAGTCCGGCGGTGGAGCCGGCGCCCT TTGCCAAGGCGTGCGAGGAGCCACATGGAGCCATCCCGAATTTCACCGACTGA
AA sequence Show only first row Show all	>Lus10033535 pacid=23143280 polypeptide=Lus10033535 locus=Lus10033535.g ID=Lus10033535.BGIv1.0 annot-version=v1.0 MASSTFASAGASIKLASRHILRSTFLAAGKTSQLNLTPLFRSPRSLRTSALPGARSFSCNSQAASTGADYTRPSSNVQELHVYEINERDRGSPAVLRLSQ KPVNSLGDLVPFSNKLYSGDLKKRIGITAGICVLIQHKPEKKGDRYEAIYSFYFGDYGQISVQGSYLTYEDSHLAVTGGTGIFEGVYGQVKLNQIVFPFK LFYTFYLKGLKADLPQELLEAPVEPSPAVEPAPFAKACEEPHGAIPNFTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	2.0	0.8767
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	3.5	0.8670
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	3.6	0.8253
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	5.7	0.8563
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	6.5	0.8566
AT1G70780			unknown protein		Lus10034416 [exp]	8.7	0.8168
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	9.4	0.8386
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	10.9	0.8495
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	12.0	0.8163
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	12.4	0.8358

Compare expression of checked genes

Lus10033535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.