Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017572 [exp] 580 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112500 [exp] 321 / 9e-107 ND / Potri.004G102400 [exp] 298 / 5e-98 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033536 pacid=23143379 polypeptide=Lus10033536 locus=Lus10033536.g ID=Lus10033536.BGIv1.0 annot-version=v1.0 ATGCATTTCGATTCTTCAATCTCTCTTTACCCTTCAATTCCCCAACAACCTCCTCCTTCTTCCCTCCCATCCAAACCCCAAACCCTAATTCCTCCCCCAT CCTCTTCCTCGTCATTCCTCGTACTCCGCAACAATCAAAGCTCCGAACCAACTGTTCTGTTCCTTGTTGCTTCCCCTTACTTGGGTGGCGCCAAGATCCT TCTTAAGCTGTATGTTTTGGATAAAAAGAAGAATGCTTTTGCTAAAGCACCTCAAGTCTGTTGCAGTCAGAAGGGTCTCGGTTTCGTCCCCAATTTGGGG GTTCTGCTCGATGTCGACCATGGGGTGTCGTTGAAGATTGTTGGGTCGGTTAATTTCTTCTGTTTGTACTCGGTTTCCAGCAGGAAAGTTTGGGTCTTTG CTCTGAAGTTGGTCGATGGTGAAGCAGCGTTGAAAATGATGAGGTGTGCGGTGATCGAGTGTGCTGTTCCTGTTTGGTCTATTAGTGTCTCGTTTGGGTT CTTGATTTTAGGGCAGGATGGTGGGGTTAGGGTTTTTAGTCTAAAGCAGCTTGCCGCCAAGGGGAAAGTCAACAACAAGGCCAAGAGTTCAAGTTCAGAT GGAACTTTGGAGCTGAACGGTAAACTTGAGGTTTTGAAGTTGCCAAATGATATCATTGGAGGACATAAGTCTGGTGGTTTGACTTCTGGCCCTGCAACCA ATGGCTTCTTAAATGGGAAGATCGAAAAGCATAATGTATCAGTAAAGCCGAGATCTGTGAGATGGAGAAAAGATTCTGATCAAGCATGTTCCTGCTTTGT CCCATTTAAGAGCAAGGATGTTGAGGGCTCTGGATCCAGCATTGGGAAGGCTACGTCTATTCAGGCATTGTCCTCCAAAAAGTTTATGATTTTGGATTCC ACTGGAGACTTACATGTCTTGTCTCTGTCTAACCCAGGTGGTGGATCAAACATTGTCTCTGACATAAGAAAGATTCCCTACAGCATGAAAGTGCAAAATC TTGCCGTGCTTCCAGATATTTCTTTGAGTAAGTTTGCTCTACATGCTAATAAGTTGAATGGTCCTCTAGTTGAGAATAGGCTTGTGACAGAAATTTCTGA ATTGGTATCTGGAACCATGTTACATAGAAATTTCGGAAAGATTGACTAG
AA sequence Show only first row Show all	>Lus10033536 pacid=23143379 polypeptide=Lus10033536 locus=Lus10033536.g ID=Lus10033536.BGIv1.0 annot-version=v1.0 MHFDSSISLYPSIPQQPPPSSLPSKPQTLIPPPSSSSSFLVLRNNQSSEPTVLFLVASPYLGGAKILLKLYVLDKKKNAFAKAPQVCCSQKGLGFVPNLG VLLDVDHGVSLKIVGSVNFFCLYSVSSRKVWVFALKLVDGEAALKMMRCAVIECAVPVWSISVSFGFLILGQDGGVRVFSLKQLAAKGKVNNKAKSSSSD GTLELNGKLEVLKLPNDIIGGHKSGGLTSGPATNGFLNGKIEKHNVSVKPRSVRWRKDSDQACSCFVPFKSKDVEGSGSSIGKATSIQALSSKKFMILDS TGDLHVLSLSNPGGGSNIVSDIRKIPYSMKVQNLAVLPDISLSKFALHANKLNGPLVENRLVTEISELVSGTMLHRNFGKID

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033536 [exp]	0	1
AT3G04160			unknown protein		Lus10042519 [exp]	2.8	0.8003
AT5G14850			Alg9-like mannosyltransferase ...		Lus10034759 [exp]	3.9	0.8020
AT2G24960			unknown protein		Lus10026250 [exp]	6.4	0.8168
					Lus10017572 [exp]	10.2	0.8073
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	11.8	0.7506
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	14.0	0.7370
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	18.3	0.7677
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	23.0	0.7771
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	24.0	0.7606
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	24.5	0.7339

Compare expression of checked genes

Lus10033536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.