Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16030 171 / 9e-51 unknown protein AT3G02500 163 / 4e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017573 [exp] 523 / 0 AT5G16030 196 / 2e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102200 [exp] 283 / 1e-94 AT3G02500 192 / 1e-59 unknown protein Potri.017G112600 [exp] 279 / 4e-93 AT3G02500 197 / 2e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033537 pacid=23143455 polypeptide=Lus10033537 locus=Lus10033537.g ID=Lus10033537.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAACCACGGAACACGGCTCTCGACGACGAGAAGACTTAAGCAGTCTAAGAGACTGGACTGTGAGACCTCAACTGAGCAGTGACAACAGGA AATCCAGGAGGTTCTCAGGATCCTACATCAGAAGTTTCAGAGAAGATGCCACCAAATCATTCACCATTTCCAGCACTGCCTCTTCTCCAGGTTACCCTCT AAAAGAAGAGATTGACCCATCAACATACTCATTCACCACTGCTCTGAAAGCTCTGCAGACAAGGTCAGGGATGTGTAAAAGCTGGGAATGCTTATCACCA GATGGGTTTGCTTTGAACTCGAAATGGAACGAAGCTGAGAAGTACATATGTAACCCTCTTTCAGGGGAGGTTCCCATGGAGTGCCTATCCGCTAAGACTT TGAGTGGAAGGTCATTCTACCCTTCCGCCACTAATAACAATAGGATCACAATGTCTGCACCTCTGGTCTACTCGAGGCGAATCCACGTTAAGCCTGCAGC AGCATCAAAGGATCGTCCGAATTGTAATCCTGTGCATTCTCCCATTGCAGAAACCAAAAGTGACAGCTGTGGTAATACTACTAGAGATATTGGAACACAA AGCACCATACCTGAGCTCAGTTCAAGCGGGTCTACTAGCACAAGTACAAAGCCTCCTCCTTTCGTAACAGAGATATCGTTGCCATTGAAGAAGAGTGAAG CAGAAAGTGGAGGAGATGGAGATTCCCCTAGCTGCAATTCAAAGATAAAAGCTGCAGAAAAGACTCACATAGCAGAAGAGACGACCAAAACAGAGGGAAG GAAAAAGGACAATGATGTAGTATGGAAGGGCAACACCACCACCACCAGCAGCCAAGGCGGTTGTTTGTCATGGATGAGAAAAAGGCAAAGAGAGAAACAG AAACCCAGGAACAAGAACATCTTCCTCCGTAAGCTTGAAGGATGCTGA
AA sequence Show only first row Show all	>Lus10033537 pacid=23143455 polypeptide=Lus10033537 locus=Lus10033537.g ID=Lus10033537.BGIv1.0 annot-version=v1.0 MASSTTEHGSRRREDLSSLRDWTVRPQLSSDNRKSRRFSGSYIRSFREDATKSFTISSTASSPGYPLKEEIDPSTYSFTTALKALQTRSGMCKSWECLSP DGFALNSKWNEAEKYICNPLSGEVPMECLSAKTLSGRSFYPSATNNNRITMSAPLVYSRRIHVKPAAASKDRPNCNPVHSPIAETKSDSCGNTTRDIGTQ STIPELSSSGSTSTSTKPPPFVTEISLPLKKSEAESGGDGDSPSCNSKIKAAEKTHIAEETTKTEGRKKDNDVVWKGNTTTTSSQGGCLSWMRKRQREKQ KPRNKNIFLRKLEGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16030			unknown protein		Lus10033537 [exp]	0	1
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	1.7	0.9403
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	2.2	0.9011
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	4.7	0.8825
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	6.3	0.9104
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10017229 [exp]	9.7	0.8740
					Lus10011890 [exp]	11.6	0.8854
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	12.5	0.8488
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10041362 [exp]	13.6	0.8685
AT1G07080			Thioredoxin superfamily protei...		Lus10022669 [exp]	14.4	0.8874
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	14.5	0.8980

Compare expression of checked genes

Lus10033537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.