Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38660 290 / 4e-98 APE1 acclimation of photosynthesis to environment (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017574 [exp] 412 / 6e-146 AT5G38660 363 / 5e-127 acclimation of photosynthesis to environment (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102100 [exp] 317 / 1e-108 AT5G38660 355 / 6e-124 acclimation of photosynthesis to environment (.1.2) Potri.017G112700 [exp] 303 / 2e-103 AT5G38660 302 / 4e-103 acclimation of photosynthesis to environment (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11016 [flax] [poplar] DUF2854 Protein of unknown function (DUF2854)
Representative CDS sequence Show only first row Show all	>Lus10033538 pacid=23143483 polypeptide=Lus10033538 locus=Lus10033538.g ID=Lus10033538.BGIv1.0 annot-version=v1.0 ATGAAAGCCGTGATTGCATCTCCAGTAATGGCGGCAAAAGTCGGAACCCTTCCCGGTTTCCCTTCCGTGACTCGTCCTCTCAGCTTCTTCGTCTCTTCGC ATCCGGCTTCTTCTTCTTCTTCTTCTCCACCGAAAACAAAGTTCAGCCTAGGACGCAACAACTACAATATCAGGCTTCGTTTCGTCGCCAAGGTTGCGGA TTCCACTCAGCCTAATACTTCGTCTTCCTCCAGTTCCAAAACCCTTGTTCCTGATAACGAATTCACTCTCGCTAAGGTCTCGTTTGGTGTTATCGGGCTA GGTCTTGGTGTTTCACTCTTGTCGTATGGCTTTGGGGCATATTTTAATATCTTAGCAGGATCCGAATGGTCTGCTTTAATGCTCACTTATGGATTCCCTC TTGCAATCATTGGTATGGCTCTTAAGTATGCAGAACTGAAGCCGGTCCCATGCTTGACTTATTCGGACGCTGAAGCATTGAGGGAAACATATGCCACTCC AATCTTAAAGCAGGTCAGAAACGACGTTACCAGGTACCGATATGGCGATGAGCAACACTTAGAAGAGGCATTGAAGCGAATATTCCAGTATGGTCAGGTG CGCAGTGTTACTTTGAACTACACGTCTTCTTTGCATTACTCCTTGATTGATGGCGGAGGAATACCTCGTAGGAGTGCACCGATTCTACAAATGATTCGAG AAGAGGTTACCGATGATGGTAAATATTGCCTTGTAATGGTATTCGAGGCGAAAGCTCTAGAATTATCAGACTTTGAGCGAAGACAGGCAAAATTCTCTTC CTTTTTTGGACCAGATGTCACAGCTGAAGTTGGTGAGTTTGTATATGTCACAGCTGAAGTTGGGAAGGGGGAAAATGATCTATTCGAAGTGCGGCTCATT TCGAATTTAAATGCCAAAGTATCGTCGTCGTAA
AA sequence Show only first row Show all	>Lus10033538 pacid=23143483 polypeptide=Lus10033538 locus=Lus10033538.g ID=Lus10033538.BGIv1.0 annot-version=v1.0 MKAVIASPVMAAKVGTLPGFPSVTRPLSFFVSSHPASSSSSSPPKTKFSLGRNNYNIRLRFVAKVADSTQPNTSSSSSSKTLVPDNEFTLAKVSFGVIGL GLGVSLLSYGFGAYFNILAGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYSDAEALRETYATPILKQVRNDVTRYRYGDEQHLEEALKRIFQYGQV RSVTLNYTSSLHYSLIDGGGIPRRSAPILQMIREEVTDDGKYCLVMVFEAKALELSDFERRQAKFSSFFGPDVTAEVGEFVYVTAEVGKGENDLFEVRLI SNLNAKVSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	0	1
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	3.7	0.9313
AT1G80380			P-loop containing nucleoside t...		Lus10028609 [exp]	4.9	0.9101
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	6.3	0.8973
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	9.8	0.9019
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	10.2	0.8955
					Lus10030090 [exp]	10.5	0.9127
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	10.7	0.9029
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	13.0	0.8795
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	13.7	0.8892
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	13.7	0.9034

Compare expression of checked genes

Lus10033538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.