Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38690 377 / 2e-123 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67780 358 / 8e-117 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 333 / 4e-107 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT2G23530 103 / 6e-23 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 95 / 1e-20 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G09060 50 / 3e-06 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017575 [exp] 1056 / 0 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10000845 [exp] 108 / 5e-25 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10019647 [exp] 106 / 2e-24 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10023846 [exp] 100 / 8e-23 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10021004 [exp] 66 / 2e-12 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10017092 [exp] 44 / 0.0004 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 44 / 0.0005 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024400 [exp] 285 / 3e-86 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.006G257400 [exp] 265 / 3e-79 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.007G036200 [exp] 103 / 5e-23 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.009G108400 [exp] 99 / 6e-22 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.012G044400 [exp] 75 / 1e-14 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 49 / 1e-05 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 43 / 0.0009 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [flax] [poplar] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Lus10033539 pacid=23143266 polypeptide=Lus10033539 locus=Lus10033539.g ID=Lus10033539.BGIv1.0 annot-version=v1.0 ATGACTATGGCATCCAGCTCTGCTGCTACGGAGATCGGTGTTCCTCAGCTGTTGAAGAAAGGGAAGAGTCGGAATACGAATCCTGGAGTAAGAGTTGTGG GCGGTAGAATTTATGATTCTTATAATGGGAAAACCTGTCACCAATGTCGCCAGAAGACTATGGATGTTATGGCCCCGTGTAAGAAACTGAAAGTGAAGGG CAAACCATGTCCCACTACTTATTGCCATACGTGCTTGCGGAATAGGTACGGAGAGGTGGCTGATAATGTCTCACAAGTGGCTGACTGGCACTGTCCAAAG TGCCGAGGCATTTGCAATTGCAGCTTTTGCAGGAAGAAGCAAGGTCACCCGCCCACTGGTATCCTCGCCCATACAGCAAAGCAACATGGGTTTGCATCTG TTTCTGAACTGTTACTGGTGAAAGGCCCTGAAAACTTTGTGTATGCTAGGGCAAAGGGTGCTTCCACAAAGAAAACTCTGCAAATAGTGGAGCCTAAAGT TGCTTCACTAGGGAAGCCAGGAAAGGAGAATTCTTTGGATGGAAACAGTGATTTTCCCTTGAATTCTCGGGATGAAATTTCAAGTCCCAAGAGTAAGAAG CATAGGGTAGCTGAAGAAACTTCAGTGAAAGAAGACCCTACCCAAGATGATGAAAAGGCAAGCAGTGACCTTAGTGAAAATTATAACCTTGAAACCAAGA CAAAGCCATCTGAACAATCATTCCCGATTCTTCAAAAAGAAATTGTACTTCCCGAAGTTCCATTGCCTCAAGGTTCATGCTTAACTGAAGTGGCAGGAGT TGAATTGGGTCCTGAAGATGTTGGACATGCCTTACAATTCCTGACATTTTACAATGCTTTTGAAAAGGAATTTGATGTGAAGAAAGGGCATGCTGAAGCA GTTATTAGGGAACTAGCAAAGGCCCGACGAGGATGTCGGTCACAGTCCTCTTTAGTAATCCAGTTTCATATCCAGCTGCTGTCACTCATTCAAGATTACG TTGATGAACGGTGTCCAACCTTAAGTCCGACAGATGGCGAGAATTCCTGGCTTCTATCACTGGGAGGTCTTGTCTCCAAGTCCCCTATCATGTCGAAGGA ATTTCCTCCTGACTGTTTTGGGAAAGGGAATGAAGGATATGAGGAGTTGAGCATCACTGAAAGACTCAAACTTCTAACTTTTCTATGCGATGAAGCTCTC AACACAAATGAATTGAGGGATATAATTGATGGACAAAATATTGAATTTGATCAACGTAAGAAGGAAGCAAAGGCAAGAGTTGCTGCTGCAAAGGACAAGG TAAAGGAATTGAACAGGAAGAGTCAGGACGAGATAGCAAAAGCTCAACTTGCCAAAAACGGGGTTCTTTTAACTATTCCTGAGCATGAAGCATTAACGTC TGAGATAAACATGCAAATTTCTCAAGCTCATGCAGAAATGATGGAGGCCAAGCAGATGGTGCCTAAGGAATTACAAAGATCTGATGCTGTGAGAATGGCC CCCATGTTCGTGGATGCCAAGGGTCAAGCATTTTGGAGACTCAAGAGCTACAACAGTCAGGAAGTCATCTTGCTTCAAGATTTAGGCGAATGCGAAATGG ATTCACCCAGCGAGAAGTGGTTTGTATATAGTGAAGCACAGAAACCAGAAGTTGAGTACTATGTATCTGAGACAAGGCAAGTCATCACAATGAGATTATG TCTGATGTGTCGATTTCAAATTGGAATTTTGTGTTTACTTGGGTGTTACTTTGGTATCAGGAAACGGACCAAGGTTAGAAAAGCTAGAAAAGCTTCTCAA CCGTCATCAAGCGAGAAGATGGAGGAACCCTCATCAAACGAGAAGATGGAGGAAGAACCTTCACCAAACGAGAAGATGGAGGAGAGCTCTTAG
AA sequence Show only first row Show all	>Lus10033539 pacid=23143266 polypeptide=Lus10033539 locus=Lus10033539.g ID=Lus10033539.BGIv1.0 annot-version=v1.0 MTMASSSAATEIGVPQLLKKGKSRNTNPGVRVVGGRIYDSYNGKTCHQCRQKTMDVMAPCKKLKVKGKPCPTTYCHTCLRNRYGEVADNVSQVADWHCPK CRGICNCSFCRKKQGHPPTGILAHTAKQHGFASVSELLLVKGPENFVYARAKGASTKKTLQIVEPKVASLGKPGKENSLDGNSDFPLNSRDEISSPKSKK HRVAEETSVKEDPTQDDEKASSDLSENYNLETKTKPSEQSFPILQKEIVLPEVPLPQGSCLTEVAGVELGPEDVGHALQFLTFYNAFEKEFDVKKGHAEA VIRELAKARRGCRSQSSLVIQFHIQLLSLIQDYVDERCPTLSPTDGENSWLLSLGGLVSKSPIMSKEFPPDCFGKGNEGYEELSITERLKLLTFLCDEAL NTNELRDIIDGQNIEFDQRKKEAKARVAAAKDKVKELNRKSQDEIAKAQLAKNGVLLTIPEHEALTSEINMQISQAHAEMMEAKQMVPKELQRSDAVRMA PMFVDAKGQAFWRLKSYNSQEVILLQDLGECEMDSPSEKWFVYSEAQKPEVEYYVSETRQVITMRLCLMCRFQIGILCLLGCYFGIRKRTKVRKARKASQ PSSSEKMEEPSSNEKMEEEPSPNEKMEESS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38690			Zinc-finger domain of monoamin...		Lus10033539 [exp]	0	1
AT1G73450			Protein kinase superfamily pro...		Lus10042297 [exp]	1.7	0.9243
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	2.8	0.9050
AT4G20720			dentin sialophosphoprotein-rel...		Lus10015137 [exp]	3.7	0.8895
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	5.3	0.8757
AT5G65950			unknown protein		Lus10041289 [exp]	6.0	0.8925
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	8.5	0.8782
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	10.1	0.9033
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	12.2	0.8423
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	15.0	0.8963
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10030162 [exp]	15.2	0.8878

Compare expression of checked genes

Lus10033539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.