Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54370 392 / 6e-137 Late embryogenesis abundant (LEA) protein-related (.1) AT4G27400 380 / 3e-132 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 365 / 4e-126 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60520 271 / 2e-89 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 273 / 1e-88 late embryogenesis abundant protein-related / LEA protein-related (.1) AT3G19430 231 / 4e-71 late embryogenesis abundant protein-related / LEA protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017577 [exp] 639 / 0 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10020169 [exp] 385 / 5e-133 AT5G54370 479 / 5e-170 Late embryogenesis abundant (LEA) protein-related (.1) Lus10038588 [exp] 380 / 4e-132 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 378 / 3e-131 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031297 [exp] 342 / 7e-117 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10037886 [exp] 300 / 5e-101 AT5G54370 394 / 4e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10036107 [exp] 275 / 2e-90 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 263 / 2e-86 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 265 / 3e-86 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127900 [exp] 428 / 4e-151 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.012G145400 [exp] 369 / 4e-127 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.001G405650 [exp] 274 / 1e-90 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 263 / 1e-85 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012500 [exp] 256 / 2e-83 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G145700 [exp] 233 / 2e-72 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G097400 [exp] 228 / 4e-68 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [flax] [poplar] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Lus10033540 pacid=23143301 polypeptide=Lus10033540 locus=Lus10033540.g ID=Lus10033540.BGIv1.0 annot-version=v1.0 ATGGAGGGTTCAGTACTGAGTAGTATGGTAGTGGTGTTGCTGATTATAATTGGGAGCGCAACTCAAATCTCTGCATACTACACAACTTGCAGCTACGGTC CATGCAAGCTAACGCAATTAGAATGCCCAAGTGAATGCCCTGAACTCTATCCCACAGATCCCAAGTCCAAAGCTTGCTACGTCGACTGTTACTCTCCCGT CTGCAAAGCTTCCTGCAAGAATCGAAAACCCAACTGCAACTCTCCTGGGGCAGCCTGTCTAGACCCGCGATTCATTGGCGGAGACGGCGTCGTATTCTAC TTCCACGGCAAGGCCAACGAGAACTTCGCACTGGTCTCCGACCCCAACCTCCAAATCAACGCCCGGTTGACAGGACACCGGCCAGCGGGCCGACCACGGG ACTTCACCTGGATCCAAGCCCTGGGCTTTCTCTTCAACTCGGCCCAAACAACCTTCACAATAGAAGCCACCAAATCCGCCACGTGGAGCGACGACATCGA CCACCTCAGTTTCTCCCACAACGGGAAGGACATACTCATCCCGACTGGCCACCTGTCCACGTGGATGTCCCCCGACAACGCCAACATTGTGGTCCAACGG ACTTCCGACAGGAACAGCGTGAGCATCACGATTCCGGATGTCGCAGAGGTGACGGTAAATGTGTTCCCGGTAACGGAGGAAGATGACAGGATCCATGGGT ACAAGGTTCCTGTCGGGGAGGACTGCTTTGTACATCTGGAGGTGCAGTTTAAGTTTCATGGGTTGTCGGAGAAGGTGGACGGCGTGCTGGGGAGGACTTA CCGGCCGGATTTCAAGAACCCGGCGGCGGCGAAGCCTGGAGTGGCGATGCCAGTGGTGGGAGGGGAAGATGAGTACAGAACGAGCTCCCTCGTTGCGGCT GATTGTGGGGCCTGCCTTTTCAATCCGACGGCTGCTAGGGAGATGAGCATAATTGACGGTGGTGATTCGGTTGTGGATTGCAGTGGACGGTTTGGTGGTG GTAATGGAATCGTCTGCAGGAAATGA
AA sequence Show only first row Show all	>Lus10033540 pacid=23143301 polypeptide=Lus10033540 locus=Lus10033540.g ID=Lus10033540.BGIv1.0 annot-version=v1.0 MEGSVLSSMVVVLLIIIGSATQISAYYTTCSYGPCKLTQLECPSECPELYPTDPKSKACYVDCYSPVCKASCKNRKPNCNSPGAACLDPRFIGGDGVVFY FHGKANENFALVSDPNLQINARLTGHRPAGRPRDFTWIQALGFLFNSAQTTFTIEATKSATWSDDIDHLSFSHNGKDILIPTGHLSTWMSPDNANIVVQR TSDRNSVSITIPDVAEVTVNVFPVTEEDDRIHGYKVPVGEDCFVHLEVQFKFHGLSEKVDGVLGRTYRPDFKNPAAAKPGVAMPVVGGEDEYRTSSLVAA DCGACLFNPTAAREMSIIDGGDSVVDCSGRFGGGNGIVCRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	1.0	0.9961
AT3G19990			unknown protein		Lus10028681 [exp]	1.4	0.9895
AT5G54370			Late embryogenesis abundant (L...		Lus10031297 [exp]	3.5	0.9852
AT1G06930			unknown protein		Lus10009929 [exp]	3.7	0.9846
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	3.9	0.9857
AT3G19990			unknown protein		Lus10028680 [exp]	4.6	0.9877
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	4.9	0.9857
					Lus10005393 [exp]	5.2	0.9835
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	6.3	0.9838
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10017634 [exp]	7.1	0.9494

Compare expression of checked genes

Lus10033540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.