Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04560 52 / 2e-08 AWPM-19-like family protein (.1) AT1G29520 50 / 4e-08 AWPM-19-like family protein (.1) AT5G46530 43 / 1e-05 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017578 [exp] 104 / 8e-29 AT1G04560 148 / 1e-45 AWPM-19-like family protein (.1) Lus10014456 [exp] 48 / 4e-07 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10023713 [exp] 48 / 5e-07 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10025374 [exp] 45 / 4e-06 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10015255 [exp] 44 / 9e-06 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10004587 [exp] 40 / 0.0002 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10011973 [exp] 39 / 0.0004 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113000 [exp] 70 / 2e-15 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 48 / 3e-07 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.010G064200 [exp] 45 / 3e-06 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 39 / 0.0004 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [flax] [poplar] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Lus10033541 pacid=23143543 polypeptide=Lus10033541 locus=Lus10033541.g ID=Lus10033541.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGGTTGATGTGTCCTATGTTAATAGTGAACTTGGTGGTTGTCTTCATCGTACTTGGTCTTGCCGCTTGGTCCCTTGACAAATACATCGACG GCCAACAGAATCAACCCCCGGAATTTCCTGAAATTCCCTTGTTGTACGTGTCAAATACAGATATGGGAGGGAATGAGTCCACAATCTTCATGCTGGTCTA TGCGCTGATTGCTGGTGCAGTCGGTGCCGCCTCGACGCTGTTTGGGTTCATCCACCTTCGGTCATGGACGAGTCAGAGTTTGGCCTCTGCCGCTTCTTTG GCGCTCGTCTCTTGGTCTCTTGCTGCTCTCTCTTCTGGTGGTGTTTGGCGGCATTGCCGTCTCACGGTTAATATGGTTGTGCATGTTACGGCTCAGTTAT GGCTCATAGTACTGCCAATTGGAATTGTCCGATCGTTTGGGTCGATCAACTCTTATTTTTCTGGTTGTCAAGTTCAAAATGGATGA
AA sequence Show only first row Show all	>Lus10033541 pacid=23143543 polypeptide=Lus10033541 locus=Lus10033541.g ID=Lus10033541.BGIv1.0 annot-version=v1.0 MGRGLMCPMLIVNLVVVFIVLGLAAWSLDKYIDGQQNQPPEFPEIPLLYVSNTDMGGNESTIFMLVYALIAGAVGAASTLFGFIHLRSWTSQSLASAASL ALVSWSLAALSSGGVWRHCRLTVNMVVHVTAQLWLIVLPIGIVRSFGSINSYFSGCQVQNG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10026707 [exp]	2.4	0.7271
					Lus10027601 [exp]	3.5	0.7326
					Lus10028008 [exp]	6.6	0.5901
					Lus10012677 [exp]	8.5	0.7255
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029812 [exp]	8.9	0.6754
					Lus10014737 [exp]	10.8	0.6868
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	12.0	0.6868
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	13.2	0.6868
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	14.2	0.6868
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10033877 [exp]	14.9	0.6855

Compare expression of checked genes

Lus10033541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.