Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44260 562 / 0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 541 / 0 Plant protein of unknown function (DUF946) (.1) AT3G01870 498 / 2e-170 Plant protein of unknown function (DUF946) (.1) AT3G01880 495 / 3e-169 Plant protein of unknown function (DUF946) (.1) AT5G18490 440 / 4e-148 Plant protein of unknown function (DUF946) (.1) AT5G43950 436 / 2e-146 Plant protein of unknown function (DUF946) (.1) AT3G04350 434 / 8e-146 Plant protein of unknown function (DUF946) (.1) AT1G04090 420 / 4e-140 Plant protein of unknown function (DUF946) (.1) AT4G17140 54 / 4e-07 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017580 [exp] 1004 / 0 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 894 / 0 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017579 [exp] 523 / 0 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10000813 [exp] 458 / 5e-155 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 454 / 2e-153 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 441 / 1e-148 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 441 / 1e-148 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10011036 [exp] 58 / 2e-08 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 56 / 1e-07 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232500 [exp] 637 / 0 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 609 / 0 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 597 / 0 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.013G048300 [exp] 437 / 4e-147 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 432 / 5e-145 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.002G256802 [exp] 126 / 7e-33 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 54 / 5e-07 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10033542 pacid=23143325 polypeptide=Lus10033542 locus=Lus10033542.g ID=Lus10033542.BGIv1.0 annot-version=v1.0 ATGTCTTCCTACTCCGCCCTCTGCCACCGCCCACTTAATTTTCCTGCAATCTCCTCCTCCTCTCGCCGACTCACTTTCCCTCTTTGTTCTTCACTGTTCC CGGAATCACATATCCCCAAGCTAAGTAACCTTCTCTCTCAGCCAGTCAGCTTACATCATCTCCTCTCATCTCAGTTCCTCCCCACTGTCAGCTCTCACCT TAAAAGTTTCAACATTGCGTACTCAGCATCAGCAGCGATGGAATCAATTTCATGGCCGTCGGTGAACGGTGGATTCGGCTCCGGAGCAATTGATCTCGGC GGCGGACTCCACGTCTTCCAAACTGCTTCGTTCAACAAAATCTGGTCCACCCAGCAAGGAGGACCCGATAATCTTGGAGCTTCCTTCTTCGAACCTTCTG AACTGCCTCCCGGCTTTTACATGCTCGGCACCTACAGCCAGCCCAACGCCAACCCAAAATCCCGAGGCTGGATCCTCGCCGGAAAAGACGCTGACGAAGG AGGAGATGCGCCGCCGTTGAAGCAACCTATGGATTACACCTTGGTTTGGAACAGTAGCATCGACTCGGAATCGGACGGCAAAGAAGGAACGGGATACTTC TGGCTCCCGGTCCCACCAGAAGGTTATAGAGCTGTCGGCCACGTCATCACCACCTCCCCTGACAAGCCTCCCCTCGACAAAATCCGCTGCGTCCGATCAG ATCTCACCAACGAATGCCACGCAGACACGTGGCTTTGGGGCCCAACTGACGGAGGTAATCCTGACCCGACCGGTTTCAACGTGTACAGTCTTAGCCCGAT TGACGACCTCGCAGCAGGCGGAGTCAACGTGGGCACATTCATCGCCCAATCCTCCGGAAATCCAGGATCCACCACGAACGTCTCCTGTCTGAAGAATCAG AATTATTCAATCGAGAAATTGTCTGCGTCAATGCCGAATTTGGATCAAATCAAATCGCTCTTCAAGACGTACGCTCCGTGGATTTATCTCCATCCGAACG AAGAATTTCTACCTTCTTCCGTCGATTGGTTTTTCGCCAACGAGACGCTTCTAGTTGAGCGTGGGAAAGAAGCCAGCCCGACTCGGATCGACCCAAATGG GTCGAACCTTCCGCAAGGCGGGTCCAACGACGGGGCGTACTGGTTGGACCTACCGGCCGATGGAGCGGCGAAGGAGAGAGTGAAGAGAGGACAGATGTCA AGCGTGGAGGTGTATTTACACGCGAAGCCAGTCTCGGGAGGGACATTTACGGACATAGCCGTGTGGGTCTTCTACCCGTTCAACGGACCGGGAAGGGCAA AAGTGGAATTCATTAGTAACTTAAAGCTAGGAAAATTAGGAGAGCACGTGGGGGACTGGGAGCACGTGACCTTACGGATCAGCAACTTCAACGGGTTGCT TCAGAGCGTCTACTTCTCGCAGCACAGTGCCGGGCAGTGGGTCGGGATCACCGATCTTGAGTACCAAGGAGGTAGCCGACCCGTGGTTTACTCTTCACTC CACGGGCACGCGATGTACCCGAGACCCGGGTTGGTGCTGCTGGGTGGTGACAAGGACATTGGGGTCAGAGACGACACATCCAAAGGCGGGATGGTGGTGG ATACGGCTGCGGCGTTCACAGTGGTGGCAGCGGAGTATCTAGGAAAGGAGGCGGTGGTGGAACCGCCGTGGCTGAACTATATGAGGGAGTGGGGCCCGAA GATTGATTACAACGTGGACGCTGAGCTGGCGGCGGTGAGGAAGTTGCTTATTGGGAAGCTGAAGAATGCTTTTGATAAGATGGTGAGCAATTTGCCCAAG GAAGCGCTTGGGGAAGAAGGGCCCACTGGGCCTAAGGTTAAAGCCAGCTGGACAGGGGATGAAGCTTGA
AA sequence Show only first row Show all	>Lus10033542 pacid=23143325 polypeptide=Lus10033542 locus=Lus10033542.g ID=Lus10033542.BGIv1.0 annot-version=v1.0 MSSYSALCHRPLNFPAISSSSRRLTFPLCSSLFPESHIPKLSNLLSQPVSLHHLLSSQFLPTVSSHLKSFNIAYSASAAMESISWPSVNGGFGSGAIDLG GGLHVFQTASFNKIWSTQQGGPDNLGASFFEPSELPPGFYMLGTYSQPNANPKSRGWILAGKDADEGGDAPPLKQPMDYTLVWNSSIDSESDGKEGTGYF WLPVPPEGYRAVGHVITTSPDKPPLDKIRCVRSDLTNECHADTWLWGPTDGGNPDPTGFNVYSLSPIDDLAAGGVNVGTFIAQSSGNPGSTTNVSCLKNQ NYSIEKLSASMPNLDQIKSLFKTYAPWIYLHPNEEFLPSSVDWFFANETLLVERGKEASPTRIDPNGSNLPQGGSNDGAYWLDLPADGAAKERVKRGQMS SVEVYLHAKPVSGGTFTDIAVWVFYPFNGPGRAKVEFISNLKLGKLGEHVGDWEHVTLRISNFNGLLQSVYFSQHSAGQWVGITDLEYQGGSRPVVYSSL HGHAMYPRPGLVLLGGDKDIGVRDDTSKGGMVVDTAAAFTVVAAEYLGKEAVVEPPWLNYMREWGPKIDYNVDAELAAVRKLLIGKLKNAFDKMVSNLPK EALGEEGPTGPKVKASWTGDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44260			Plant protein of unknown funct...		Lus10033542 [exp]	0	1
AT4G16400			unknown protein		Lus10004418 [exp]	3.5	0.8961
AT3G51710			D-mannose binding lectin prote...		Lus10025258 [exp]	5.1	0.9234
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	6.9	0.8914
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10035373 [exp]	9.8	0.9044
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	10.0	0.9229
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	15.9	0.8773
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	20.3	0.8486
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	21.2	0.8778
AT1G26140			unknown protein		Lus10035070 [exp]	24.0	0.8464
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	24.5	0.8977

Compare expression of checked genes

Lus10033542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.