Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02510 629 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G16040 624 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 185 / 6e-54 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60870 139 / 8e-37 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT3G26100 136 / 7e-36 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G19420 127 / 1e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 125 / 4e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G11580 124 / 4e-31 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G08710 121 / 2e-30 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT1G27060 120 / 3e-30 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017581 [exp] 737 / 0 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 175 / 3e-50 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10042215 [exp] 151 / 4e-41 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10029536 [exp] 138 / 1e-36 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10035957 [exp] 137 / 2e-36 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10011399 [exp] 126 / 7e-32 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036030 [exp] 127 / 1e-31 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 127 / 1e-31 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10006455 [exp] 123 / 1e-30 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101800 [exp] 671 / 0 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 670 / 0 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 182 / 6e-53 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G000600 [exp] 130 / 8e-34 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.017G139600 [exp] 130 / 2e-32 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.016G101700 [exp] 125 / 2e-31 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 122 / 5e-30 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.015G009400 [exp] 121 / 5e-30 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.012G018600 [exp] 120 / 1e-29 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.017G099900 [exp] 120 / 1e-29 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10033543 pacid=23143243 polypeptide=Lus10033543 locus=Lus10033543.g ID=Lus10033543.BGIv1.0 annot-version=v1.0 ATGGCTACTCGTACCTCGGTCATAGCCTGGGGCGCAGGCGAAGACGGGCAGCTGGGAATAGGCGACAATGAAGACAGGGAGTGGGTCTGCGTCGTCAAAG CTCTTCAACCCTACAAAGTCCGATCCGTCGTTGCCGGAAGCCGCAACTCTCTTGCCATTTGCGACGATGGCAAGCTGTTCACGTGGGGTTGGAACCAGAG AGGGACGCTGGGTCGCCAACCGGAGACCAAGATTGAAAATGTTCCCAGTCAAGTGAAAGCCCTCGCCGATGTCAATATTGTTCAGGCGGCTATTGGTGGA TGGCATTGCTTGGCTGTTGATGATCAAGGACGTGCTTACGCTTGGGGTGGGAACGAGTATGGACAATGTGGTGAAGAGCCTGAACGCAAGGATGATACTG GGAGGCTATTAAGGAGGGATATAGTTATTCCTCAACGTTGTGCTCCGAAGCTTTCAGTTCAACAGGTAGCGGCTGGCGGTACACATTCAGTGGTGCTTAC ACGTGAAGGCCATGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACATCAAGCAAATTTCTGTTCCTGTGCGTGTACAAGGCCTTGATAAAGTGAGG CTCATTGCCGTTGGGGCATTTCATAATTTAGCTCTTAAAGAAGACGGAACACTGTGGGCATGGGGCAATAATGAATATGGGCAACTTGGAACTGGTGATA CCCAGCCAAGATCACAGCCTATACTTGTCCAAGGGCTTTCTGGTCTCAATTTGGTTGACATTGCAGCTGGAGGATGGCATTCTACCACATTAACTAAGGA TGGCGAGGTGTATGGCTGGGGGAGAGGTGAACATGGAAGACTGGGTTTCGGCGATAACGACAAGAGCAGCAAAATGGTGCCCCAGAAGGTTAATTTGTTG ACAGGGGAGGAAATAGTTCAGGTATCGTGCGGCGGGACGCACTCAGTGGCACTGACAAAAGACGGCAGGGTATTCTCGTTCGGTAGAGGGGACCATGGTA GATTAGGAAACGGGAGGAAGGCGACTACAGGGCAGCCAATGAAAGTACCAATCATTAGAGCAGAAGAAGATGGCGAAGATGAGGAAGAAGAAGAAGAAGA AGAAGAGTGGAGGGCGAAGCTTGTTGCGTGTGGGGGAAGACACACATTGGCAGTCGTAGAGTGGGAAGAAGAAGAGCAGCAAACACACACCCAGTGA
AA sequence Show only first row Show all	>Lus10033543 pacid=23143243 polypeptide=Lus10033543 locus=Lus10033543.g ID=Lus10033543.BGIv1.0 annot-version=v1.0 MATRTSVIAWGAGEDGQLGIGDNEDREWVCVVKALQPYKVRSVVAGSRNSLAICDDGKLFTWGWNQRGTLGRQPETKIENVPSQVKALADVNIVQAAIGG WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRLLRRDIVIPQRCAPKLSVQQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLDKVR LIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSQPILVQGLSGLNLVDIAAGGWHSTTLTKDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL TGEEIVQVSCGGTHSVALTKDGRVFSFGRGDHGRLGNGRKATTGQPMKVPIIRAEEDGEDEEEEEEEEEWRAKLVACGGRHTLAVVEWEEEEQQTHTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02510			Regulator of chromosome conden...		Lus10033543 [exp]	0	1
AT3G53970			proteasome inhibitor-related (...		Lus10032056 [exp]	11.0	0.7329
AT4G14600			Target SNARE coiled-coil domai...		Lus10036461 [exp]	20.8	0.6814
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	31.8	0.7219
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	37.4	0.7256
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	44.4	0.7236
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	46.9	0.7260
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	48.7	0.6664
AT3G57450			unknown protein		Lus10018070 [exp]	48.8	0.7200
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	49.3	0.6961
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10037487 [exp]	57.1	0.6687

Compare expression of checked genes

Lus10033543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.