Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61170 79 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 78 / 3e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 77 / 5e-16 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 77 / 6e-16 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39952 74 / 9e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 73 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 72 / 2e-14 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37310 71 / 7e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74600 71 / 9e-14 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G63370 70 / 1e-13 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017583 [exp] 187 / 3e-55 AT5G66520 481 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020081 [exp] 86 / 6e-19 AT3G49710 886 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 78 / 3e-16 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013341 [exp] 77 / 4e-16 AT1G05750 525 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 77 / 5e-16 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 77 / 5e-16 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000117 [exp] 77 / 6e-16 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018265 [exp] 74 / 7e-16 AT5G16860 192 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 76 / 2e-15 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237000 [exp] 106 / 4e-26 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 82 / 1e-17 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G012500 [exp] 81 / 2e-17 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 79 / 2e-16 AT3G22690 570 / 0.0 unknown protein Potri.003G223900 [exp] 75 / 3e-15 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G137200 [exp] 74 / 5e-15 AT3G14330 787 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 74 / 1e-14 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G042100 [exp] 73 / 1e-14 AT4G32430 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 73 / 1e-14 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G014800 [exp] 72 / 2e-14 AT5G40410 749 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033544 pacid=23143242 polypeptide=Lus10033544 locus=Lus10033544.g ID=Lus10033544.BGIv1.0 annot-version=v1.0 ATGAGCTTGATAACGGTGGTGGTAACCGGTAAAGTCGTCCCCGCTAATCTCGAAATTGAAGGCTCGCGCATTCTCGCTGCCTATGTTAAGAACAGTCGGT TTGATGAGGCATTTGCTCTGTTTGATCAGATGAGAGTAGACAAAGTAGTAATTGATAAGTTTCTTGCAGCGACTATGCTATCAGCTTTTACAGGGACAGG GTCTTTGGAGAAAGGCAAATGGATGCTTAAACACATCCTGGAAAATGGGATTGAGATGGATTCCAAACTTGCTACGGCAATAGTCGACGAGCTGTGTAAG AAGCAAAATGAAGTTGAGATGGGAGAAGGAATAGAGAAGAGAATGGTGGAGCTTGAACCAGGAAACAGCGGGCGGTACGTGTTGTTGGCTAACATGTATG AAGATGCAGGTCGATCAGAAGAGGCTGGGAAAGTAAGGAAATTGATGGAAGAGAGTGGAGTGAAGAAGGAAGCCGGGGTTTCGAGGATAGAGTTGGTTGG AGGTGAGATGAGGGAGTTTAAGGCGGGGGGGAGAGCGGAGAAGGAGGTTTACGAGAAAGTCGAAGAGATGATGCAGCGAGTGAGGTTTGTGGATAAAGGG TACAGTAACAAGGACGAAGGAGGATTGAATGGGCACCACAGTGAGGTACTAGCCATGGCATTTGGATTACTTGAGGGTGTGGAAGAATCTGAGGGCGTGC AAAGATTGTCATCAAGTAAGCAAAATGATCTCTAA
AA sequence Show only first row Show all	>Lus10033544 pacid=23143242 polypeptide=Lus10033544 locus=Lus10033544.g ID=Lus10033544.BGIv1.0 annot-version=v1.0 MSLITVVVTGKVVPANLEIEGSRILAAYVKNSRFDEAFALFDQMRVDKVVIDKFLAATMLSAFTGTGSLEKGKWMLKHILENGIEMDSKLATAIVDELCK KQNEVEMGEGIEKRMVELEPGNSGRYVLLANMYEDAGRSEEAGKVRKLMEESGVKKEAGVSRIELVGGEMREFKAGGRAEKEVYEKVEEMMQRVRFVDKG YSNKDEGGLNGHHSEVLAMAFGLLEGVEESEGVQRLSSSKQNDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	1.7	0.9355
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	5.7	0.9044
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	5.7	0.8694
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	8.0	0.8971
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	10.2	0.8714
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	10.8	0.9018
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	12.0	0.8761
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	13.0	0.8917
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	15.2	0.8800
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	15.7	0.8878

Compare expression of checked genes

Lus10033544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.